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The map label for this gene is cydA [H]

Identifier: 50841664

GI number: 50841664

Start: 211681

End: 213201

Strand: Reverse

Name: cydA [H]

Synonym: PPA0176

Alternate gene names: 50841664

Gene position: 213201-211681 (Counterclockwise)

Preceding gene: 50841665

Following gene: 50841663

Centisome position: 8.33

GC content: 60.16

Gene sequence:

>1521_bases
ATGGATGCCCAACTGATCGCCCGATGGCAATTCGGGATCACGACGGTCTACCACTTCTTCTTCGTCCCGATCACGATCGC
GCTATCGATGCTCGTGGCGGTGATGCAGACAGTGTGGCTTAAGACCCGCAACGACCGTTATCTTCGTCTGACCAAGTTCT
ACGGCAAGCTCTTCCTCATCAACTTCGCCCTCGGCGTCGTCACCGGAATCGTGCAGGAGTTCCAGTTCGGCATGAACTGG
TCGGAATACTCGCGATTCGTTGGCGACATCTTCGGTGCTCCGCTGGCCCTTGAGGCCTTGGTGGCCTTCTTCATGGAGTC
CACCTTCGTTGGCTTGTGGGTGTTCGGCTGGGAGAAACTCCCCAAGGGAGTCCACCTGGCGTGCATCTACCTGACCGCCA
TTGGCACCATGATCTCCGCAGTATTCATCCTCGCGGCAAACTCCTGGATGCAGAATCCTGTCGGAGCCAGCTACAACCCA
GTCACCCACCGGGCCGAGCTGACCGATTTCGGGGCCGTGCTAAGCAATCCGGTATTCAAGGCGACTTTCGTTCACCAGAT
CTCATCTTCCTACACGGTGGCTGGCGCCCTTATCGCCGCCATCGCCTTCTGGCACTTGGCCAAAGTCGCCAGGGGACGCA
CCACCTCCCAGATCTCCGACGCCGAAGAGGTCGAGAGCGTCCGCACGTGGCGCTGGGCCTCGAAGTTCGGCGCATGGGTG
CTCATTGTCGCTTGCGTCGGCGTTGTGCTGAGTGGCGACTACCAGGGCAAGGTCATGACCGACGCACAGCCCATGAAGAT
GGCTGCTGCCGAGGCGGCTTACCAGAACACCTCGGACTTCTCAGTGCTGACCATCGGCAACAAGGACGGCTCGGAGGAGG
TGTGGGCTCTCAAGATACCCGGCATGCTCGGCTTCCTCGGTAACGGCAAGTGGGGCTCGCAGGTCAAGGGCATCAACGAG
CTCAAGAGCTATCAGGTCCACGAGTACACCTACCATCGCAAGGACGGCTCGCAGACCCCCCTGCAGGCCTCTTACCAGAA
TGTGCTGCGTCAGAAGATCGACGCCAACGGCATCAAACTCGAGCCGAACGTCCCGTTGTCCTACTGGACCTTCCGCATCA
TGATCACCCTCGGCATGATCGGTGGCCTTATCGGCCTCGTCATGCTCATCGCAATGCGCGGAGGCCGCAACCCGAAGCCG
CACGGGTGGCTGACCCTCTTCATGATCGCCCTACCCCTGCTGCCACTGTTCGCCATTTCCTTCGGTTGGATATTCACGGA
GATGGGACGCCAGCCTTGGATCGTCGCGGGTGTGCTGCCAACTACGGCAGCCGTCTCACCCAACGTTTCGGCCGGCAGCG
TGCTTTTCTCGACCATCGCCTACACCGTCGTCTACGGAATTCTGGCGGTCGTCGAGGTGGGGCTGTTCTGGAAGGCCCTC
AAGGAGGGGCTGCCTGAGCTCTCCACCCGTGATCAACCTGTTACCGAGGGCGAGGACACTCCGTTGTCCTTCGCATACTG
A

Upstream 100 bases:

>100_bases
GTCACCAGCAACATGGCACGCACCTGGCCTTTTGGTCTGTTTTTGCGCAACACCACTCAGTCGGGCCAAACCGGTGACCT
CGGATAGTAAGGTACCCGCC

Downstream 100 bases:

>100_bases
GGAGGTAACGACATGCTTCCCGTTCTTGAAACTACTGCCCACTCGCCCCTGACGATCGTCTGGTTCGTCCTCATCACCGT
TCTGTGGGTCGGATTCTTCT

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MDAQLIARWQFGITTVYHFFFVPITIALSMLVAVMQTVWLKTRNDRYLRLTKFYGKLFLINFALGVVTGIVQEFQFGMNW
SEYSRFVGDIFGAPLALEALVAFFMESTFVGLWVFGWEKLPKGVHLACIYLTAIGTMISAVFILAANSWMQNPVGASYNP
VTHRAELTDFGAVLSNPVFKATFVHQISSSYTVAGALIAAIAFWHLAKVARGRTTSQISDAEEVESVRTWRWASKFGAWV
LIVACVGVVLSGDYQGKVMTDAQPMKMAAAEAAYQNTSDFSVLTIGNKDGSEEVWALKIPGMLGFLGNGKWGSQVKGINE
LKSYQVHEYTYHRKDGSQTPLQASYQNVLRQKIDANGIKLEPNVPLSYWTFRIMITLGMIGGLIGLVMLIAMRGGRNPKP
HGWLTLFMIALPLLPLFAISFGWIFTEMGRQPWIVAGVLPTTAAVSPNVSAGSVLFSTIAYTVVYGILAVVEVGLFWKAL
KEGLPELSTRDQPVTEGEDTPLSFAY

Sequences:

>Translated_506_residues
MDAQLIARWQFGITTVYHFFFVPITIALSMLVAVMQTVWLKTRNDRYLRLTKFYGKLFLINFALGVVTGIVQEFQFGMNW
SEYSRFVGDIFGAPLALEALVAFFMESTFVGLWVFGWEKLPKGVHLACIYLTAIGTMISAVFILAANSWMQNPVGASYNP
VTHRAELTDFGAVLSNPVFKATFVHQISSSYTVAGALIAAIAFWHLAKVARGRTTSQISDAEEVESVRTWRWASKFGAWV
LIVACVGVVLSGDYQGKVMTDAQPMKMAAAEAAYQNTSDFSVLTIGNKDGSEEVWALKIPGMLGFLGNGKWGSQVKGINE
LKSYQVHEYTYHRKDGSQTPLQASYQNVLRQKIDANGIKLEPNVPLSYWTFRIMITLGMIGGLIGLVMLIAMRGGRNPKP
HGWLTLFMIALPLLPLFAISFGWIFTEMGRQPWIVAGVLPTTAAVSPNVSAGSVLFSTIAYTVVYGILAVVEVGLFWKAL
KEGLPELSTRDQPVTEGEDTPLSFAY
>Mature_506_residues
MDAQLIARWQFGITTVYHFFFVPITIALSMLVAVMQTVWLKTRNDRYLRLTKFYGKLFLINFALGVVTGIVQEFQFGMNW
SEYSRFVGDIFGAPLALEALVAFFMESTFVGLWVFGWEKLPKGVHLACIYLTAIGTMISAVFILAANSWMQNPVGASYNP
VTHRAELTDFGAVLSNPVFKATFVHQISSSYTVAGALIAAIAFWHLAKVARGRTTSQISDAEEVESVRTWRWASKFGAWV
LIVACVGVVLSGDYQGKVMTDAQPMKMAAAEAAYQNTSDFSVLTIGNKDGSEEVWALKIPGMLGFLGNGKWGSQVKGINE
LKSYQVHEYTYHRKDGSQTPLQASYQNVLRQKIDANGIKLEPNVPLSYWTFRIMITLGMIGGLIGLVMLIAMRGGRNPKP
HGWLTLFMIALPLLPLFAISFGWIFTEMGRQPWIVAGVLPTTAAVSPNVSAGSVLFSTIAYTVVYGILAVVEVGLFWKAL
KEGLPELSTRDQPVTEGEDTPLSFAY

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=529, Percent_Identity=37.6181474480151, Blast_Score=300, Evalue=1e-82,
Organism=Escherichia coli, GI87081779, Length=526, Percent_Identity=34.9809885931559, Blast_Score=291, Evalue=6e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 55876; Mature: 55876

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]