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The map label for this gene is cydB [H]

Identifier: 50841663

GI number: 50841663

Start: 210595

End: 211668

Strand: Reverse

Name: cydB [H]

Synonym: PPA0175

Alternate gene names: 50841663

Gene position: 211668-210595 (Counterclockwise)

Preceding gene: 50841664

Following gene: 50841662

Centisome position: 8.27

GC content: 62.29

Gene sequence:

>1074_bases
ATGCTTCCCGTTCTTGAAACTACTGCCCACTCGCCCCTGACGATCGTCTGGTTCGTCCTCATCACCGTTCTGTGGGTCGG
ATTCTTCTTCCTCGAAGGATTCGACTTCGGCGTCGCCATGCTGCTGCCCTTCCTGGGACGTGACGACAAGGATCGTCGTC
TCATGGTCAACACCATCGGACCGACCTGGGACGGCAACGAGGTGTGGTTGCTGACCGCCGGTGGCGCTACCTTCGCCGCC
TTCCCCGGCTGGTACGCGACGATGTTCTCCGGTCTGTACCTGCCACTACTACTGGTGTTGCTCGGTCTCATCGTCCGTGG
CGTTGCCTTCGAATATCGTTCGAAGAACCCGTCCTCCTCGTGGCGCAACGCTTTCGACTGGATGGCCACTATTGGTTCCT
TCCTGCCCACCTTGGTGCTCGGCGTCGGCTTCGCGAACTTCGTCCGCGGCCTGGCCGTCGGCCCGCACTCGACCCCAGAC
GGCGGCACTGCGCCGTTAGTGACGACCTCCTTCTGGGGCTTGTTCACCCCGTTCGCCCTCATCGGCGGCATTCTGTTCGT
GGTGCTCTTCTGCGCTCACGGAGCTAACTTCGTCGCGCTCAAAACGATGGGTGACATGCACGACCGCGCTCGCAAGACCT
CGGCCAAGCTGGGCTGGATCGCCACCGTCGTTGCCCTGGTGTGGGCCTTGATGTTCAACATCATGTACGTCACCCGAGAC
GGACGTCAGGTGCTCACCTGGATCATCTGCCTGCTCGTCGTCGTGCTGCTGGCCGCTGGTTCGGCGGTCGTCGCCAAGGG
CCGCGAGGGGCTGGCTTTCCTGTGCACCGCTCTGGGTATCGCCCTCATGATCGTTGCCTGCATGTTCGCCATGTACGGCA
ACCTCGGGTACCGCCCGTCGGGTATCGCATTCGACATGTGGATTGCCTCCGCAACCGGCCGGACACTGAAGATCATGACG
ATCAGCGCCTGCGTCTTCGTGCCGATTGTGCTCGCCTACCAGGTCTGGAGTTACTGGGTGTTCCGCAAGCGCCTCACTCG
GGAGGCCATCCCGGACACCGCGGTGGCTGCCTAA

Upstream 100 bases:

>100_bases
GGCCCTCAAGGAGGGGCTGCCTGAGCTCTCCACCCGTGATCAACCTGTTACCGAGGGCGAGGACACTCCGTTGTCCTTCG
CATACTGAGGAGGTAACGAC

Downstream 100 bases:

>100_bases
TCCGTGGCAGCTCCGCTGGATCCGCGCCTGGTTCGCCGGGCGCGGGCCACTCTTCCTTTTCTCGCAGGTCTGTGCGTGGT
GGGCGTGGCTACGGCTTTGC

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MLPVLETTAHSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIGPTWDGNEVWLLTAGGATFAA
FPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSSWRNAFDWMATIGSFLPTLVLGVGFANFVRGLAVGPHSTPD
GGTAPLVTTSFWGLFTPFALIGGILFVVLFCAHGANFVALKTMGDMHDRARKTSAKLGWIATVVALVWALMFNIMYVTRD
GRQVLTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALGIALMIVACMFAMYGNLGYRPSGIAFDMWIASATGRTLKIMT
ISACVFVPIVLAYQVWSYWVFRKRLTREAIPDTAVAA

Sequences:

>Translated_357_residues
MLPVLETTAHSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIGPTWDGNEVWLLTAGGATFAA
FPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSSWRNAFDWMATIGSFLPTLVLGVGFANFVRGLAVGPHSTPD
GGTAPLVTTSFWGLFTPFALIGGILFVVLFCAHGANFVALKTMGDMHDRARKTSAKLGWIATVVALVWALMFNIMYVTRD
GRQVLTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALGIALMIVACMFAMYGNLGYRPSGIAFDMWIASATGRTLKIMT
ISACVFVPIVLAYQVWSYWVFRKRLTREAIPDTAVAA
>Mature_357_residues
MLPVLETTAHSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIGPTWDGNEVWLLTAGGATFAA
FPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSSWRNAFDWMATIGSFLPTLVLGVGFANFVRGLAVGPHSTPD
GGTAPLVTTSFWGLFTPFALIGGILFVVLFCAHGANFVALKTMGDMHDRARKTSAKLGWIATVVALVWALMFNIMYVTRD
GRQVLTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALGIALMIVACMFAMYGNLGYRPSGIAFDMWIASATGRTLKIMT
ISACVFVPIVLAYQVWSYWVFRKRLTREAIPDTAVAA

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=375, Percent_Identity=36.5333333333333, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1787213, Length=375, Percent_Identity=32, Blast_Score=171, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 39011; Mature: 39011

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPVLETTAHSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECC
PTWDGNEVWLLTAGGATFAAFPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSS
CCCCCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
WRNAFDWMATIGSFLPTLVLGVGFANFVRGLAVGPHSTPDGGTAPLVTTSFWGLFTPFAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
IGGILFVVLFCAHGANFVALKTMGDMHDRARKTSAKLGWIATVVALVWALMFNIMYVTRD
HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GRQVLTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALGIALMIVACMFAMYGNLGYRPS
CHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GIAFDMWIASATGRTLKIMTISACVFVPIVLAYQVWSYWVFRKRLTREAIPDTAVAA
CCEEEHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MLPVLETTAHSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECC
PTWDGNEVWLLTAGGATFAAFPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSS
CCCCCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
WRNAFDWMATIGSFLPTLVLGVGFANFVRGLAVGPHSTPDGGTAPLVTTSFWGLFTPFAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
IGGILFVVLFCAHGANFVALKTMGDMHDRARKTSAKLGWIATVVALVWALMFNIMYVTRD
HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GRQVLTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALGIALMIVACMFAMYGNLGYRPS
CHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GIAFDMWIASATGRTLKIMTISACVFVPIVLAYQVWSYWVFRKRLTREAIPDTAVAA
CCEEEHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]