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The map label for this gene is yahJ [H]

Identifier: 49187384

GI number: 49187384

Start: 4300936

End: 4302186

Strand: Reverse

Name: yahJ [H]

Synonym: BAS4389

Alternate gene names: 49187384

Gene position: 4302186-4300936 (Counterclockwise)

Preceding gene: 49187385

Following gene: 49187383

Centisome position: 82.28

GC content: 38.21

Gene sequence:

>1251_bases
GTGAGTGTGAAATCACAATATTGGTTAACGAATGTAAAACTTGAATGTGGGTACGTATATGAGGAATCACGAATTACAAG
TACAGAAACGGAAATTTGTAGTTTATTTATTGAAGATGGAAAGATTACGAACATATTACCTGGAATTGTATCAGAGCAAG
ATGGTGAAGTAGTAAATGCAAATGGTTTACTGGCATTACCAGCATTTGAAGAAATGCATATCCATATTGATAAGACGTAT
TATGGTGGACCATGGAAAGCGTGTACACCAGTAAAGAGTATATTCACTCGTATTCATGAGGAGCAAACTATTCTTCCGAA
GCAATTAGAAACTGCAAAGAGTAGAGCGGAGAAAATGTTGCAATTACTTCTTGAAAATGGAGCGACAAATATTCGAACAC
ATTGCAATATTGATCCTGTAATTGGTCTTGGGAATTTAGAAGCAACGATTGCGGCACTGGAAACATATAAAGATAAGTTA
TCAGCAAAAATTGTAGCATTCCCGCAACACGGTTTGTTACGAAGTAATTCCGTAGGGCTTGTAAAAGACGCTATGCGTAT
GGGAGCTCATTTAGTAGGTGGAGTAGACCCAGCTACAGTAGATGGTAATATTGAAAAATCATTGAATACAATTATGGATA
TTGCAGTAGAGTTTGATTCAGACATTGATATTCATTTACATGACGCGGATCAACTCGGAACATTTACAATGAAGAGATTA
GCTGCATTAACAGAAGAAGCAGGGTGGCAAGGAAGAGTTACGATTAGTCATGCTCTTGGACTTGGAGATGTATCTGTAGA
AGAAGCGGGGGAAATGGCTGAACGACTTGCGGCATTAGGTATTGATATAACGTCAACAGTTCCAGTTAGTAGACATGTAA
TTCCAGTTCCGTTATTAAATCGTAAAGGTGTAAAAGTTTCGCTAGGAAACGATAGTATAACTGATCATTGGTCTCCGTTT
GGGACAGGAGATATGTTGCAAAAGGCAAATTGTCTAGCGGAGAGATTTAGATGGATTGATGAGCGCTCTTTAGGGAAAGC
ACTTCAGTTTATTACGGGTGGGAAATCTATATTAGATGATCAAGGAAATCGTCAATGGCCAAAAATTGGGGATGAAGCAA
ATATCGTCTTTACAGAAGCATCATGTTCAGCCGAGGTAGTAGCAAGACAAACAGAGCGCTGTGCGGTTTTATATAAAGGA
AATGTTGTTGCTGGTAGTTTGGAAAAAACGGCTATAAATAATCTTGTTTGA

Upstream 100 bases:

>100_bases
TTCTATCAGTGTAAAAATGATTTTACACTGATAGAAATTTTTATCTGTTTTTGTTTCGTTTGTAAGTAGAAAAATCATAT
TGCGAAGGGAGATTGACAAA

Downstream 100 bases:

>100_bases
GAGGATGATGGAAATGCAAAATGCGTATTGGTTAACGAATGTACGATTAGAAACAGGTTACAAGTTTAATAATGAAGTAG
TTACAGGTACAGAAACAGCT

Product: putative deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANGLLALPAFEEMHIHIDKTY
YGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKL
SAKIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRL
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLNRKGVKVSLGNDSITDHWSPF
GTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKG
NVVAGSLEKTAINNLV

Sequences:

>Translated_416_residues
MSVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANGLLALPAFEEMHIHIDKTY
YGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKL
SAKIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRL
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLNRKGVKVSLGNDSITDHWSPF
GTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKG
NVVAGSLEKTAINNLV
>Mature_415_residues
SVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANGLLALPAFEEMHIHIDKTYY
GGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLS
AKIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRLA
ALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLNRKGVKVSLGNDSITDHWSPFG
TGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGN
VVAGSLEKTAINNLV

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786517, Length=407, Percent_Identity=42.5061425061425, Blast_Score=324, Evalue=7e-90,
Organism=Escherichia coli, GI1786531, Length=401, Percent_Identity=25.6857855361596, Blast_Score=111, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45408; Mature: 45277

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNA
CCCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHEEEECCCCEEECCCCCCCCCCCCEECC
NGLLALPAFEEMHIHIDKTYYGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKML
CCEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSAKIVAFPQHGLLRSNSVGL
HHHHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHH
VKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRL
HHHHHHHCHHHHCCCCCCEECCCHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHH
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLN
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCEEECCCCC
RKGVKVSLGNDSITDHWSPFGTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDD
CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
QGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNVVAGSLEKTAINNLV
CCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEECCEEECCHHHHHHHCCC
>Mature Secondary Structure 
SVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNA
CCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHEEEECCCCEEECCCCCCCCCCCCEECC
NGLLALPAFEEMHIHIDKTYYGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKML
CCEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSAKIVAFPQHGLLRSNSVGL
HHHHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHH
VKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRL
HHHHHHHCHHHHCCCCCCEECCCHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHH
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLN
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCEEECCCCC
RKGVKVSLGNDSITDHWSPFGTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDD
CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
QGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNVVAGSLEKTAINNLV
CCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEECCEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]