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The map label for this gene is yahJ [H]

Identifier: 49187383

GI number: 49187383

Start: 4299678

End: 4300943

Strand: Reverse

Name: yahJ [H]

Synonym: BAS4388

Alternate gene names: 49187383

Gene position: 4300943-4299678 (Counterclockwise)

Preceding gene: 49187384

Following gene: 49187382

Centisome position: 82.26

GC content: 38.23

Gene sequence:

>1266_bases
TTGTTTGAGAGGATGATGGAAATGCAAAATGCGTATTGGTTAACGAATGTACGATTAGAAACAGGTTACAAGTTTAATAA
TGAAGTAGTTACAGGTACAGAAACAGCTTTGCATCATTTACTTATACAAGATGGAAAGATTGAAAAGATTGTACTTGCGG
ATGTACCGCTTCAAACAGAATATGAAACGAAAGATGCGAAAGAATTGCTTGTGCTTCCGTCGTTTGTGGAAAATCATTTT
CACTTGGATAAGACAAAACTTGGTGGTCCATGGGAAGCATGTACACCAGTAAAAAATATTATTGAGAGATTAGAGTTAGA
ACAGCAGGAGTTACCGATTTTAGCTCAAACAACTGGAGAGAGAGCAGAGTTATTACTAAGAAACATTTTAAATGCTGGTT
CGACTCATATTCGAACGCATGTAAATATTGATCCGTATATCGGTCTTAAAAACTTAGAATCTGTACGTCAAACTTTAGAG
AATATGAAAGATGCGTTTACATATGAAATCGTAGCATTCCCGCAGCATGGTTTACTTCGTACAGAAGCGCATTCTCTTAT
GAGAGAAGCGATGAAAATGGGCGCAACTTTAGTAGGTGGTGTAGATCCAGCTACTGTAGATAATAATATTGAAAAATCAC
TTTTTGATATGATGGAAATCGCTGTAGAGGCAAATGCTGATGTTGATTTGCATTTACATGATGCAGGGCATTTAGGTATT
TATACAATTAAAAAGTTAGCTCAGTATACAGAGGAGGCTAGTTGGGACGGACGTGTTGCAGTCAGTCATGCGTTTAGCCT
AGGGGATGTATCTAAAGAAGAAGGAGCAGATATGGCAGACTTATTAGCTGAAAGAGGAATGTCTATTATTACGACAGTAC
CAATTAACAGAAATATGCCGCCAGTACCATTACTGACAGAAAAGGGTGTTCCCATTTCTTTAGGTTGCGATAGTATGTTT
GATTCATGGGGGCCATTTGGAAATGCTGATATTTTTGAAAGAGTAGGGCGTTTAGCAGAAAAGTATCGCTGGATGGATGA
GAAGTCTTTAGCTTCTTCTTTAGCGTATATTACAGGTGGAAAAACGCCATTGGATCAAGAAGGAAATCAAGTTTGGCCTA
AAGTAGGAGATAAAGCTGATTTCGTCTTCTTACAAGCTACTTGTTCAGCAGAAGCGATTGCTAGACGAGCAAAGCGACCA
GCTGTAATGAGAGACGGAAAAATAGTAGCAGGTTCCTTGCAACATGTTCAAGGAGTATTGATTTAA

Upstream 100 bases:

>100_bases
TGTTCAGCCGAGGTAGTAGCAAGACAAACAGAGCGCTGTGCGGTTTTATATAAAGGAAATGTTGTTGCTGGTAGTTTGGA
AAAAACGGCTATAAATAATC

Downstream 100 bases:

>100_bases
TTTACGTATCTCCCTAATTTATATATTTTTTTTCAAGGGTTCCTAATGAAAGAATAGGAATCCTTCTTTTTTACGAGAAA
AGGAGGGGAATAGGTGACAC

Product: putative deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MFERMMEMQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAKELLVLPSFVENHF
HLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLE
NMKDAFTYEIVAFPQHGLLRTEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTEKGVPISLGCDSMF
DSWGPFGNADIFERVGRLAEKYRWMDEKSLASSLAYITGGKTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRP
AVMRDGKIVAGSLQHVQGVLI

Sequences:

>Translated_421_residues
MFERMMEMQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAKELLVLPSFVENHF
HLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLE
NMKDAFTYEIVAFPQHGLLRTEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTEKGVPISLGCDSMF
DSWGPFGNADIFERVGRLAEKYRWMDEKSLASSLAYITGGKTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRP
AVMRDGKIVAGSLQHVQGVLI
>Mature_421_residues
MFERMMEMQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAKELLVLPSFVENHF
HLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLE
NMKDAFTYEIVAFPQHGLLRTEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTEKGVPISLGCDSMF
DSWGPFGNADIFERVGRLAEKYRWMDEKSLASSLAYITGGKTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRP
AVMRDGKIVAGSLQHVQGVLI

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786517, Length=405, Percent_Identity=40.2469135802469, Blast_Score=297, Evalue=7e-82,
Organism=Escherichia coli, GI1786531, Length=400, Percent_Identity=25.25, Blast_Score=104, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46853; Mature: 46853

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFERMMEMQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTE
CHHHHHHHHCCEEEEEEEEECCCEECCEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCC
YETKDAKELLVLPSFVENHFHLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGE
CCCCCCHHHEECHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEEECCCH
RAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLENMKDAFTYEIVAFPQHGLLR
HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHH
TEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
HHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMP
HHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCHHHCCCHHHHHHHCCCEEEEEECCCCCCC
PVPLLTEKGVPISLGCDSMFDSWGPFGNADIFERVGRLAEKYRWMDEKSLASSLAYITGG
CCCEEECCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
KTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRPAVMRDGKIVAGSLQHVQGVL
CCCCCCCCCEECCCCCCCCCEEEEEECCCHHHHHHHHCCCCEECCCEEEECCHHHHCCCC
I
C
>Mature Secondary Structure
MFERMMEMQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTE
CHHHHHHHHCCEEEEEEEEECCCEECCEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCC
YETKDAKELLVLPSFVENHFHLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGE
CCCCCCHHHEECHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEEECCCH
RAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLENMKDAFTYEIVAFPQHGLLR
HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHH
TEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGI
HHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
YTIKKLAQYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMP
HHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCHHHCCCHHHHHHHCCCEEEEEECCCCCCC
PVPLLTEKGVPISLGCDSMFDSWGPFGNADIFERVGRLAEKYRWMDEKSLASSLAYITGG
CCCEEECCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
KTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRPAVMRDGKIVAGSLQHVQGVL
CCCCCCCCCEECCCCCCCCCEEEEEECCCHHHHHHHHCCCCEECCCEEEECCHHHHCCCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]