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The map label for this gene is yvoA [H]

Identifier: 49186961

GI number: 49186961

Start: 3908706

End: 3909437

Strand: Reverse

Name: yvoA [H]

Synonym: BAS3963

Alternate gene names: 49186961

Gene position: 3909437-3908706 (Counterclockwise)

Preceding gene: 49186962

Following gene: 49186959

Centisome position: 74.77

GC content: 39.75

Gene sequence:

>732_bases
ATGAACATCGACAAGTATTCACCATTTCCGATCTATTATCAGATTCAAGAGTGGGTGAAACAGCTAATTGAGGACGGCGA
ATGGAAGCCGGGAGATAAAATCCCATCTGAGAATGAACTTTGCGATAAGTTCGAAGTGAGTCGTATGACAATCAGACAGG
CGATTAATAATTTAGTGGAACAAGGTTATTTATATCGGAAACGTGGAATCGGTACGTTTGTCCAACTTCCGAAAGTGGAA
CAAAAATTGCAAGGAATGACAGGATTCACAGAAGATATGATTTCTCGTGGAATGAACCCAAGTAGTCAATTGCTAAGTTT
CCGCCTAGTTCCAGCTACTGCGAAAATAGCAGACCGGCTGAGAATACAGGAGGGAGAATCGGTTTATGAAGTGAGACGTA
TTCGTTTAGCGGATGATGAACCGATTGCTTTTGAGACGACATATTTGTCGCCAGCTCTTGTAAAAGATATTAACGAAGAA
ATATTGCAACAATCTTTATATGAACATCTAGAGAAAAAACTGGGCTTTAAACTTGTTAGCGCTACTCAATCAATTGAAGC
TTCAATTGCAACGGATAATGAAGCGGAACATCTGCATATTCCTAAAAAGGCGCCAGTGCTTGTAATGCGTCAATGGTCAT
ATTCAGAAGGTGAAGTACCGTTAGAGTATGTGAAATGTATTTATCGCGGGGATCGTTATAAGTTTATTACGAACATCGCA
CGTAACAAATAA

Upstream 100 bases:

>100_bases
TATAGTGAAGCGTGTCCTGCTACAGTTTTACAACGTCATCCGAATGTAACCGTAATCGCTGATCAAGAAGCTCTATCTTT
ATGCAGTGAGGCGATTGCTG

Downstream 100 bases:

>100_bases
TATATTTCAGTTTGTGAAGTACAGTAAATGTCAAATTGTTTAACATGTAAAGAAAAAATACGACTCATCCTTACAAGGAG
TGAGTCGTATTTTTATTATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNIDKYSPFPIYYQIQEWVKQLIEDGEWKPGDKIPSENELCDKFEVSRMTIRQAINNLVEQGYLYRKRGIGTFVQLPKVE
QKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRLRIQEGESVYEVRRIRLADDEPIAFETTYLSPALVKDINEE
ILQQSLYEHLEKKLGFKLVSATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGEVPLEYVKCIYRGDRYKFITNIA
RNK

Sequences:

>Translated_243_residues
MNIDKYSPFPIYYQIQEWVKQLIEDGEWKPGDKIPSENELCDKFEVSRMTIRQAINNLVEQGYLYRKRGIGTFVQLPKVE
QKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRLRIQEGESVYEVRRIRLADDEPIAFETTYLSPALVKDINEE
ILQQSLYEHLEKKLGFKLVSATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGEVPLEYVKCIYRGDRYKFITNIA
RNK
>Mature_243_residues
MNIDKYSPFPIYYQIQEWVKQLIEDGEWKPGDKIPSENELCDKFEVSRMTIRQAINNLVEQGYLYRKRGIGTFVQLPKVE
QKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRLRIQEGESVYEVRRIRLADDEPIAFETTYLSPALVKDINEE
ILQQSLYEHLEKKLGFKLVSATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGEVPLEYVKCIYRGDRYKFITNIA
RNK

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=235, Percent_Identity=32.7659574468085, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1790540, Length=231, Percent_Identity=29.8701298701299, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790118, Length=224, Percent_Identity=29.9107142857143, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87082252, Length=240, Percent_Identity=28.3333333333333, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788418, Length=230, Percent_Identity=29.1304347826087, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28185; Mature: 28185

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDKYSPFPIYYQIQEWVKQLIEDGEWKPGDKIPSENELCDKFEVSRMTIRQAINNLVE
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRL
HCHHHHHCCCCHHHCCHHHHHHHCCCCCCHHHHHHCCCCCHHHHHEEEECCHHHHHHHHH
RIQEGESVYEVRRIRLADDEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKLVS
HHCCCCHHHHHHHHHCCCCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
ATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGEVPLEYVKCIYRGDRYKFITNIA
HHHHHHHEECCCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHH
RNK
CCC
>Mature Secondary Structure
MNIDKYSPFPIYYQIQEWVKQLIEDGEWKPGDKIPSENELCDKFEVSRMTIRQAINNLVE
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRL
HCHHHHHCCCCHHHCCHHHHHHHCCCCCCHHHHHHCCCCCHHHHHEEEECCHHHHHHHHH
RIQEGESVYEVRRIRLADDEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKLVS
HHCCCCHHHHHHHHHCCCCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
ATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGEVPLEYVKCIYRGDRYKFITNIA
HHHHHHHEECCCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHH
RNK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]