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The map label for this gene is glcT [H]

Identifier: 49186959

GI number: 49186959

Start: 3906815

End: 3907663

Strand: Reverse

Name: glcT [H]

Synonym: BAS3961

Alternate gene names: 49186959

Gene position: 3907663-3906815 (Counterclockwise)

Preceding gene: 49186961

Following gene: 49186958

Centisome position: 74.74

GC content: 32.39

Gene sequence:

>849_bases
ATGAGTAATTATCTAGAAATTAAAAAAGTTTTAAATAATAATGTCATCATTGCTAGCCATCCTGAACACGAGGAAGTAGT
AGTGATTGGTAAAGGAATTGGATTTGGAAAAAAAGCGAAAGATGTACTAGGACAAGAACAAATTGAAAAAATGTTTGTTT
TAAAAAATGAACGTGATCGTGAACAATACAAACTGTTAGTGCCGCATGTGAGTGAAAAATTAATTGAATTAATGAATGAT
ATTATGTTCTATATTCAAGAAAAAGCAAAATCACCATTAAATGAACATATTCATATCGCTTTAACAGATCATATTTCTTT
TGCAATTAAACGATTAAAACAAGGACTTACAATTGATAATCCTTTTTTAGTTGAAACGAAAATGCTCTATCCAGAAGAAT
ATGAAATTGCTGAAGGTGTTGTAGATCTTTTAAATTCTCGTTTGCAAATTACATTGCCAGAGGGAGAAATTGGTTTTATT
GCACTTCATATTTACAGTTCGCTTACAAATTCAGATCTATCTTCAGTGAATCAAAACTCCCGTCTCATTGCACAACTTGT
ATCTTTAATTGAGACAAACTTACAAATTACATTGGACCAAGAAAGTATCCACTATTTACGCCTTATCCGTCATTTGCAAT
ATGCTATTGAACGGGTGAAAAAAGGGGAGAAAGTAGAGGAATCACAAAGTTTTGCTGAGTTATTAAGGGCGGAATATCCT
GTCTGTTATAATTTAGCTTGGAAGCTAGTTAAGGTCATGCAAAAAGAATTGCAACTTCCTGTGTATGAAGCAGAAAGTAT
ATATTTAACAATGCACCTGCAGCGCTTAGTGAAAGCAGAGCATGTGTAA

Upstream 100 bases:

>100_bases
AAAATGAATTTTTATGAAATGGTAGATGTTTTACATTGACGACAAAGAAGGATGTTCTGTAACATAAAAGCAGGCTATTT
AAGGACGAGGGTGGTGTTAT

Downstream 100 bases:

>100_bases
AAAGACATATATTTTTGTCTAAAATGAAAACGTTAAAAAAATCATTGAATCGCTTACAATAGTTATGTATAATAACTATT
GCAAAGTTATACAAATTTCG

Product: transcription antiterminator GlcT

Products: NA

Alternate protein names: RNA-binding antitermination protein GlcT [H]

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLGQEQIEKMFVLKNERDREQYKLLVPHVSEKLIELMND
IMFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDNPFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFI
ALHIYSSLTNSDLSSVNQNSRLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLRAEYP
VCYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV

Sequences:

>Translated_282_residues
MSNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLGQEQIEKMFVLKNERDREQYKLLVPHVSEKLIELMND
IMFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDNPFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFI
ALHIYSSLTNSDLSSVNQNSRLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLRAEYP
VCYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV
>Mature_281_residues
SNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLGQEQIEKMFVLKNERDREQYKLLVPHVSEKLIELMNDI
MFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDNPFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFIA
LHIYSSLTNSDLSSVNQNSRLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLRAEYPV
CYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV

Specific function: Mediates the positive regulation of the glucose PTS operon (ptsGHI) by functioning as an antiterminator factor of transcription via its interaction with the RNA-antiterminator (RAT) sequence located upstream of the ptsG gene. The RNA-binding domain of Glc

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=278, Percent_Identity=29.8561151079137, Blast_Score=157, Evalue=7e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32602; Mature: 32471

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS00654 ANTITERMINATORS_BGLG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLGQEQIEKMFVLKNERDR
CCCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHCHHHHHHHHHHCCCCCH
EQYKLLVPHVSEKLIELMNDIMFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCC
PFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFIALHIYSSLTNSDLSSVNQNS
CEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHCCHHHHHCCCCH
RLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLRAEYP
HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
VCYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV
HHHHHHHHHHHHHHHHHCCCEECCCCEEHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLGQEQIEKMFVLKNERDR
CCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHCHHHHHHHHHHCCCCCH
EQYKLLVPHVSEKLIELMNDIMFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCC
PFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFIALHIYSSLTNSDLSSVNQNS
CEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHCCHHHHHCCCCH
RLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLRAEYP
HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
VCYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV
HHHHHHHHHHHHHHHHHCCCEECCCCEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902727; 9384377 [H]