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The map label for this gene is ydaM [C]

Identifier: 49186952

GI number: 49186952

Start: 3898900

End: 3900195

Strand: Reverse

Name: ydaM [C]

Synonym: BAS3954

Alternate gene names: 49186952

Gene position: 3900195-3898900 (Counterclockwise)

Preceding gene: 49186956

Following gene: 49186951

Centisome position: 74.59

GC content: 31.4

Gene sequence:

>1296_bases
GTGATGAACATACTACATTTTTTATTAGAGAATACGGTTTTCCAAAATGTATTACAAGATCTTCAGTTAAATGTCCTTTA
TATAGAAAATGGATGCACACATCAACAAACGATAGAAAATATCCATCCAAAATGTATGTTTATAGCAAATAGTTTTGAAG
AAGGAGAAGTATTGTTTCAGAGGACTAAACCACATATTGTAATTATGTATGTAACAGATTTTTCTCAAATAAAATATATA
AAGAATATGTATAATCCACAGAGTACATTTATTGTCATTTGGGATCAACAAATAACAAGCGAGTTTGCAGAGGTGCTTAC
GTTAGGAATACGTAATATTGTGATAGCCCCTGTGACTCCGCAAATGGTGTTAGAGGAAGTGAATAAAAGCTTATATCAGC
TTTCTTTAGTGCGACAAGTAAGTTTGCAACAAGAACTACTTCAAACGATGTTTGATTTTCGAAATGATCTATTATTTATA
GTAGAAGACGATGAAATTGTTGATTGTAATACAAATTTTTTAGAGTTTTTCGGATATGAAAATTTGTTTGCTTATCGTGA
ACAACATTTAGTATTTGCTGAACATCTTATTAGAGAAAATGGATACTATTCAACAACTCATGATATAACATGGTTAGATG
ATACATTATCATATGATAGAAGAATTAAGATGTCCAACTATGAAGGGGAAGTGTCAACTTTTTTATTGCGTGCAACACCA
TTGCCAGAAGATTTATCAAGATTTATTGTGAAGTGTACAGAGATTACAGAATTAGATGAAATCTATCAAGAACAAGAAAG
GCTTGCTATGATAGATTCGTTAACAGAGATTTATAATCGTTTGAAATTCCAACAAATACTAGAGGCAGAATGGGATAATG
CGATGCGTAATAATGAAAACATAGCACTTATTTTATTTGATATAGATAATTTTAAAGCAGTAAATGACACGTATGGCCAT
GATTTTGGTGACTTAGCATTAATTGAGCTTGCAGAGCTTATGAAATCTAAAGTGGAGCAGCAACATGTGTTTGCAAGGTG
GGGAGGAGAAGAATTTATTATTTTAGTAACGAATACAGTGGAAAAAGAAGCATTTCAAGTTGCGGAATCATTACGATTTT
TTATAGAAACAAAGCAATTCTCGGGAATTTCGAAATTAACAGCGAGTTTTGGAGTTGCATTATATGAAAAAGGGATTACA
AGAGAAGAATTAATGCAACGGGCGGATATTGCATTATATGAAGCGAAAAAAAATGGTAAAAATCAAGTGTGTGTATATAG
AAAAGAAAAAAAGTGA

Upstream 100 bases:

>100_bases
ATGTATCCCTCACTCATTAAAGTTTTGAGAGAACAGTTTTTTTTATAAAAGGTTTGTGAGGAATTCAGTAGAACAAGATA
TATGAAGTGAGTGAAGACTA

Downstream 100 bases:

>100_bases
TTTTTCGCAACAAATTGTTGCGATTTTTTTTGTCTAATTATAGAATGAGAAAAATATATGTATGAAAGTACACAATAAAT
ATAATGAAGATCGTTATATT

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MMNILHFLLENTVFQNVLQDLQLNVLYIENGCTHQQTIENIHPKCMFIANSFEEGEVLFQRTKPHIVIMYVTDFSQIKYI
KNMYNPQSTFIVIWDQQITSEFAEVLTLGIRNIVIAPVTPQMVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFRNDLLFI
VEDDEIVDCNTNFLEFFGYENLFAYREQHLVFAEHLIRENGYYSTTHDITWLDDTLSYDRRIKMSNYEGEVSTFLLRATP
LPEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGH
DFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQFSGISKLTASFGVALYEKGIT
REELMQRADIALYEAKKNGKNQVCVYRKEKK

Sequences:

>Translated_431_residues
MMNILHFLLENTVFQNVLQDLQLNVLYIENGCTHQQTIENIHPKCMFIANSFEEGEVLFQRTKPHIVIMYVTDFSQIKYI
KNMYNPQSTFIVIWDQQITSEFAEVLTLGIRNIVIAPVTPQMVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFRNDLLFI
VEDDEIVDCNTNFLEFFGYENLFAYREQHLVFAEHLIRENGYYSTTHDITWLDDTLSYDRRIKMSNYEGEVSTFLLRATP
LPEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGH
DFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQFSGISKLTASFGVALYEKGIT
REELMQRADIALYEAKKNGKNQVCVYRKEKK
>Mature_431_residues
MMNILHFLLENTVFQNVLQDLQLNVLYIENGCTHQQTIENIHPKCMFIANSFEEGEVLFQRTKPHIVIMYVTDFSQIKYI
KNMYNPQSTFIVIWDQQITSEFAEVLTLGIRNIVIAPVTPQMVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFRNDLLFI
VEDDEIVDCNTNFLEFFGYENLFAYREQHLVFAEHLIRENGYYSTTHDITWLDDTLSYDRRIKMSNYEGEVSTFLLRATP
LPEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGH
DFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQFSGISKLTASFGVALYEKGIT
REELMQRADIALYEAKKNGKNQVCVYRKEKK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=266, Percent_Identity=31.5789473684211, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=32.3529411764706, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787541, Length=185, Percent_Identity=32.972972972973, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=33.1460674157303, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=32.0441988950276, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787262, Length=208, Percent_Identity=31.7307692307692, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=30.2197802197802, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=34.1614906832298, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1787056, Length=157, Percent_Identity=34.3949044585987, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788085, Length=171, Percent_Identity=30.4093567251462, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=27.6729559748428, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=32.9113924050633, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 50608; Mature: 50608

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNILHFLLENTVFQNVLQDLQLNVLYIENGCTHQQTIENIHPKCMFIANSFEEGEVLFQ
CHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCCEE
RTKPHIVIMYVTDFSQIKYIKNMYNPQSTFIVIWDQQITSEFAEVLTLGIRNIVIAPVTP
ECCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHEEEECCCH
QMVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFRNDLLFIVEDDEIVDCNTNFLEFFGYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHHHHHCCH
NLFAYREQHLVFAEHLIRENGYYSTTHDITWLDDTLSYDRRIKMSNYEGEVSTFLLRATP
HHHHHHHHHHHHHHHHHHCCCCEECCCCCEECHHHHCCCCEEEECCCCCCCCEEEEECCC
LPEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNEN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IALILFDIDNFKAVNDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTV
EEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCH
EKEAFQVAESLRFFIETKQFSGISKLTASFGVALYEKGITREELMQRADIALYEAKKNGK
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCC
NQVCVYRKEKK
CCEEEEECCCC
>Mature Secondary Structure
MMNILHFLLENTVFQNVLQDLQLNVLYIENGCTHQQTIENIHPKCMFIANSFEEGEVLFQ
CHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCCEE
RTKPHIVIMYVTDFSQIKYIKNMYNPQSTFIVIWDQQITSEFAEVLTLGIRNIVIAPVTP
ECCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHEEEECCCH
QMVLEEVNKSLYQLSLVRQVSLQQELLQTMFDFRNDLLFIVEDDEIVDCNTNFLEFFGYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHHHHHCCH
NLFAYREQHLVFAEHLIRENGYYSTTHDITWLDDTLSYDRRIKMSNYEGEVSTFLLRATP
HHHHHHHHHHHHHHHHHHCCCCEECCCCCEECHHHHCCCCEEEECCCCCCCCEEEEECCC
LPEDLSRFIVKCTEITELDEIYQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNEN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IALILFDIDNFKAVNDTYGHDFGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTV
EEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCH
EKEAFQVAESLRFFIETKQFSGISKLTASFGVALYEKGITREELMQRADIALYEAKKNGK
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCC
NQVCVYRKEKK
CCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]