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The map label for this gene is radC [C]

Identifier: 46447399

GI number: 46447399

Start: 2117803

End: 2118498

Strand: Reverse

Name: radC [C]

Synonym: pc1765

Alternate gene names: 46447399

Gene position: 2118498-2117803 (Counterclockwise)

Preceding gene: 46447400

Following gene: 46447398

Centisome position: 87.74

GC content: 37.07

Gene sequence:

>696_bases
ATGAGAATAAATGAGCATTCCATTCAGTCTTTACCTAAAGAAGAAAGACCTAGAGAGCGATTAATTCGGCATGGCGCAGA
TTCTTTATCGCTGATAGAAATTCTGGCGATCATTTTAGGTAGCGGTTCAAAAGTGGCTTCAGTTTTGGAAGTATCTCGAG
CTTTGGTGACACGATTTGGAGGATTAGAAGCCTTAATGCAAGCAACTTTGACAGAGTTACTAGAAGTTCAAGGGATTGGA
TTTGCAAAAGCCATTCAATTGAAAGCAGCCCTTAATCTTGGATTTCGAGCGACGCGCCAACAAATTAAATCTCGCTATTT
AATCGAACATTCCTCTCATGCCTACCAGTTGGTCAAAGATGAGCTTGAAAATGAGAATAGAGAAATTTTTATGGCGATAT
TTCAGGATACAAAAGGATATTTAATTACTTATGAAGTAATTTCTATTGGAAGCTTGTCCCAAACGCTTGTCCATCCAAGA
GAAGTTTTTTATTCTGCGATTCGCCACAAAGCAGCCAGTTTAATTGTTGTTCATAATCACCCAAGTGGCGATCCAATGCC
TTCAAATCAAGATTTAAAATTGACGCAAATTTTATTAGAGGGAAGTCGATTGCTAGGCATCCCGCTTCGAGATCATTTAA
TTATTGGTAAAAATTCTTACGTATCATTTAAAGATCAAAACCTTTTGTTAAAATAA

Upstream 100 bases:

>100_bases
GATTATGAAGATAATGATGTTTTACTAAAAGTTGATTTGCCAGCATTGATTGTTGATAAATATGCGCATTATCAAATCTT
AGCAGAAAGATAGGATAGGG

Downstream 100 bases:

>100_bases
ATATTCTACAAAATTTTTTTGGCATAAAGTATGCAGAAATCTTTTTAGTAAATGTATTTTTAGGTTTTTTAAGATTGAGT
TGTTTTTATTTTAAGATATT

Product: putative DNA repair protein radC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MRINEHSIQSLPKEERPRERLIRHGADSLSLIEILAIILGSGSKVASVLEVSRALVTRFGGLEALMQATLTELLEVQGIG
FAKAIQLKAALNLGFRATRQQIKSRYLIEHSSHAYQLVKDELENENREIFMAIFQDTKGYLITYEVISIGSLSQTLVHPR
EVFYSAIRHKAASLIVVHNHPSGDPMPSNQDLKLTQILLEGSRLLGIPLRDHLIIGKNSYVSFKDQNLLLK

Sequences:

>Translated_231_residues
MRINEHSIQSLPKEERPRERLIRHGADSLSLIEILAIILGSGSKVASVLEVSRALVTRFGGLEALMQATLTELLEVQGIG
FAKAIQLKAALNLGFRATRQQIKSRYLIEHSSHAYQLVKDELENENREIFMAIFQDTKGYLITYEVISIGSLSQTLVHPR
EVFYSAIRHKAASLIVVHNHPSGDPMPSNQDLKLTQILLEGSRLLGIPLRDHLIIGKNSYVSFKDQNLLLK
>Mature_231_residues
MRINEHSIQSLPKEERPRERLIRHGADSLSLIEILAIILGSGSKVASVLEVSRALVTRFGGLEALMQATLTELLEVQGIG
FAKAIQLKAALNLGFRATRQQIKSRYLIEHSSHAYQLVKDELENENREIFMAIFQDTKGYLITYEVISIGSLSQTLVHPR
EVFYSAIRHKAASLIVVHNHPSGDPMPSNQDLKLTQILLEGSRLLGIPLRDHLIIGKNSYVSFKDQNLLLK

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=32.3943661971831, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1788997, Length=116, Percent_Identity=40.5172413793103, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI2367100, Length=103, Percent_Identity=41.747572815534, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788312, Length=103, Percent_Identity=39.8058252427184, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1765_PARUW (Q6MAB0)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_008764.1
- ProteinModelPortal:   Q6MAB0
- SMR:   Q6MAB0
- STRING:   Q6MAB0
- GeneID:   2781393
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc1765
- NMPDR:   fig|264201.1.peg.1765
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   GRTHEVF
- PhylomeDB:   Q6MAB0
- ProtClustDB:   CLSK2762488
- BioCyc:   CPRO264201:PC1765-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25898; Mature: 25898

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRINEHSIQSLPKEERPRERLIRHGADSLSLIEILAIILGSGSKVASVLEVSRALVTRFG
CCCCHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
GLEALMQATLTELLEVQGIGFAKAIQLKAALNLGFRATRQQIKSRYLIEHSSHAYQLVKD
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHH
ELENENREIFMAIFQDTKGYLITYEVISIGSLSQTLVHPREVFYSAIRHKAASLIVVHNH
HHCCCCCEEEEEEEECCCCEEEEEEEEECCCHHHHHCCHHHHHHHHHHHHHCEEEEEEEC
PSGDPMPSNQDLKLTQILLEGSRLLGIPLRDHLIIGKNSYVSFKDQNLLLK
CCCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEECCCCEEEECCCCCCCC
>Mature Secondary Structure
MRINEHSIQSLPKEERPRERLIRHGADSLSLIEILAIILGSGSKVASVLEVSRALVTRFG
CCCCHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
GLEALMQATLTELLEVQGIGFAKAIQLKAALNLGFRATRQQIKSRYLIEHSSHAYQLVKD
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHH
ELENENREIFMAIFQDTKGYLITYEVISIGSLSQTLVHPREVFYSAIRHKAASLIVVHNH
HHCCCCCEEEEEEEECCCCEEEEEEEEECCCHHHHHCCHHHHHHHHHHHHHCEEEEEEEC
PSGDPMPSNQDLKLTQILLEGSRLLGIPLRDHLIIGKNSYVSFKDQNLLLK
CCCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEECCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA