Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46446388
Identifier: 46446388
GI number: 46446388
Start: 933232
End: 934737
Strand: Direct
Name: 46446388
Synonym: pc0754
Alternate gene names: NA
Gene position: 933232-934737 (Clockwise)
Preceding gene: 46446387
Following gene: 46446399
Centisome position: 38.65
GC content: 35.26
Gene sequence:
>1506_bases ATGCAAGGTCCTGATTTTTTATCTCCGAACCTTAATGCTTATCTCAATTTAGAGTCTGACCGAGAGCTTTTTCAAGCGTT AACGAAACAGCCCCTAGATTTAATTGCTTTTTTTGAGGCCGGTTGTGAGGACGAAGCTTGGTTTACAAAACACGCTGGTT TTATTCAATTAATTATTAGATGGACTGCAAAGTCATTCTATTTGAACCAACTCCCTATCTACTACGCAGAAAAACTAGCT CACATTATTCGATCTCACCAACATCAACTTAAACCTTATTTGTTATTTCAACCTGCTTTATTTTTAACATTTAAATTAGT CATTCAAGGTCAAATTCGTATTGTCAATAGCCTTTTACTGGGTACCATTAGTCCTTTTTTTAAAGACCTTTTTATCAATT ATTATCAACAACTGAAAGATCGATGGGAAATCCCAAAAATTTCTCTAGATACCTTTAATTGGATCGAGAGCTATGCGTTA AAAGAAAGTGCAGAAGAATTGTGGCGATGTGAGTCTCATGAATTAATGGCAATTATGCAGCAAGCGCAAGCTTGGAGAAT TCAAGGTTTAGTGCGTGATTGTGCGAAATTACTAAAGAAGTACATTAATCAAGAAAATGTTGTTGAAAACCTCATTAAAG CGCACCGTCAATATTTTTTAGATTGGAAAGTGGTTATCAGCGAAGTTTTTAATAGTTATGGGTATGGATTAAAATTATTA CCTTGCCAAAGTGAGACTGAACTACGCATTGAATTTTTAGATTTTAAACAAGAAACGTTAGATCTTTTTCATCAACTTGC CTCCTTTATCACCCATCTCACGTTTAGTGAGGATTTAAGTACAAGCCCTTACTATGGGAAATGTGTGAATGCTTGCCCAA GACTCATGGGAGCAGATTTGACAGGCTCTACTGTTTATGACAACCAGTTTGATGATTTACCAGGCTCTTTGGGTGAATTA AATCTTTCTGTTTGTGGTTGGCTACGCCCTCATCATATTCGAGAGATTGGCCACCAATTTTTAAACTTGAAAAAACTGAT TTTAGATGGAAATGTGCATCTCAATTATCAATCTTGGGGAGAACTACATCGCTTACAAACGTTAATTAGTTTAAGTACAA GGCAATGTCATCAATTGACGAATGACGATTTAAAATCGATTTGTCGAAATTGCTCTCGTTTAGAAGAATTTGACGTTGAA GAATGCCGTCTTCTAACAGATCAGGGAATATTAGAAATTTTTTCTAGCTGTTCCCACCTTTCTAAATTTAATTGTAACCG TTGTGACTTAATAACCGATAAAGGTCTTTTGGAAATAGGAGTTAGGGCGCATTTGTTATCTCAACTCAGCATAGAAAGAT GTTCAAAATTAACAGATCAAGGACTTCTTTATTTTCTTCGTTTAAAACCCAATTTAAAAGAGTTATCGATTAAAGGTTGT GAGTTTTCTCTTACCTGTCTTGAAGAGGTCCGACGTGAATATCCTTTTTTAAAACTGCTCGATTAA
Upstream 100 bases:
>100_bases ATTGATCGTGATTTCAGCGGCTCATTAATCTGAATAGTTCGCATATTAAGGAACTTAAGATTTAATTTATTAAAATTTAT CTGTTTTTGAGAGGATTTGC
Downstream 100 bases:
>100_bases TTGTTAATGGAGAGTGAGTACTATTAAAGGATATCAGATAGTGCTAAATAGGTAAGGCTATTTTAATAAACTGATCTAAT TGGATAGACTAATTGTTCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MQGPDFLSPNLNAYLNLESDRELFQALTKQPLDLIAFFEAGCEDEAWFTKHAGFIQLIIRWTAKSFYLNQLPIYYAEKLA HIIRSHQHQLKPYLLFQPALFLTFKLVIQGQIRIVNSLLLGTISPFFKDLFINYYQQLKDRWEIPKISLDTFNWIESYAL KESAEELWRCESHELMAIMQQAQAWRIQGLVRDCAKLLKKYINQENVVENLIKAHRQYFLDWKVVISEVFNSYGYGLKLL PCQSETELRIEFLDFKQETLDLFHQLASFITHLTFSEDLSTSPYYGKCVNACPRLMGADLTGSTVYDNQFDDLPGSLGEL NLSVCGWLRPHHIREIGHQFLNLKKLILDGNVHLNYQSWGELHRLQTLISLSTRQCHQLTNDDLKSICRNCSRLEEFDVE ECRLLTDQGILEIFSSCSHLSKFNCNRCDLITDKGLLEIGVRAHLLSQLSIERCSKLTDQGLLYFLRLKPNLKELSIKGC EFSLTCLEEVRREYPFLKLLD
Sequences:
>Translated_501_residues MQGPDFLSPNLNAYLNLESDRELFQALTKQPLDLIAFFEAGCEDEAWFTKHAGFIQLIIRWTAKSFYLNQLPIYYAEKLA HIIRSHQHQLKPYLLFQPALFLTFKLVIQGQIRIVNSLLLGTISPFFKDLFINYYQQLKDRWEIPKISLDTFNWIESYAL KESAEELWRCESHELMAIMQQAQAWRIQGLVRDCAKLLKKYINQENVVENLIKAHRQYFLDWKVVISEVFNSYGYGLKLL PCQSETELRIEFLDFKQETLDLFHQLASFITHLTFSEDLSTSPYYGKCVNACPRLMGADLTGSTVYDNQFDDLPGSLGEL NLSVCGWLRPHHIREIGHQFLNLKKLILDGNVHLNYQSWGELHRLQTLISLSTRQCHQLTNDDLKSICRNCSRLEEFDVE ECRLLTDQGILEIFSSCSHLSKFNCNRCDLITDKGLLEIGVRAHLLSQLSIERCSKLTDQGLLYFLRLKPNLKELSIKGC EFSLTCLEEVRREYPFLKLLD >Mature_501_residues MQGPDFLSPNLNAYLNLESDRELFQALTKQPLDLIAFFEAGCEDEAWFTKHAGFIQLIIRWTAKSFYLNQLPIYYAEKLA HIIRSHQHQLKPYLLFQPALFLTFKLVIQGQIRIVNSLLLGTISPFFKDLFINYYQQLKDRWEIPKISLDTFNWIESYAL KESAEELWRCESHELMAIMQQAQAWRIQGLVRDCAKLLKKYINQENVVENLIKAHRQYFLDWKVVISEVFNSYGYGLKLL PCQSETELRIEFLDFKQETLDLFHQLASFITHLTFSEDLSTSPYYGKCVNACPRLMGADLTGSTVYDNQFDDLPGSLGEL NLSVCGWLRPHHIREIGHQFLNLKKLILDGNVHLNYQSWGELHRLQTLISLSTRQCHQLTNDDLKSICRNCSRLEEFDVE ECRLLTDQGILEIFSSCSHLSKFNCNRCDLITDKGLLEIGVRAHLLSQLSIERCSKLTDQGLLYFLRLKPNLKELSIKGC EFSLTCLEEVRREYPFLKLLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI284447308, Length=233, Percent_Identity=26.6094420600858, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI296531375, Length=167, Percent_Identity=27.5449101796407, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI27734755, Length=196, Percent_Identity=26.530612244898, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI284447314, Length=189, Percent_Identity=25.3968253968254, Blast_Score=66, Evalue=8e-11, Organism=Drosophila melanogaster, GI17647819, Length=161, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58390; Mature: 58390
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGPDFLSPNLNAYLNLESDRELFQALTKQPLDLIAFFEAGCEDEAWFTKHAGFIQLIIR CCCCCCCCCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH WTAKSFYLNQLPIYYAEKLAHIIRSHQHQLKPYLLFQPALFLTFKLVIQGQIRIVNSLLL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHEECHHHHHHHHHHHHHHHHHHHHHHH GTISPFFKDLFINYYQQLKDRWEIPKISLDTFNWIESYALKESAEELWRCESHELMAIMQ HHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH QAQAWRIQGLVRDCAKLLKKYINQENVVENLIKAHRQYFLDWKVVISEVFNSYGYGLKLL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE PCQSETELRIEFLDFKQETLDLFHQLASFITHLTFSEDLSTSPYYGKCVNACPRLMGADL ECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC TGSTVYDNQFDDLPGSLGELNLSVCGWLRPHHIREIGHQFLNLKKLILDGNVHLNYQSWG CCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHEECCCEEECHHHHH ELHRLQTLISLSTRQCHQLTNDDLKSICRNCSRLEEFDVEECRLLTDQGILEIFSSCSHL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SKFNCNRCDLITDKGLLEIGVRAHLLSQLSIERCSKLTDQGLLYFLRLKPNLKELSIKGC HHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHEECCC EFSLTCLEEVRREYPFLKLLD CCHHHHHHHHHHHCCCEECCC >Mature Secondary Structure MQGPDFLSPNLNAYLNLESDRELFQALTKQPLDLIAFFEAGCEDEAWFTKHAGFIQLIIR CCCCCCCCCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH WTAKSFYLNQLPIYYAEKLAHIIRSHQHQLKPYLLFQPALFLTFKLVIQGQIRIVNSLLL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHEECHHHHHHHHHHHHHHHHHHHHHHH GTISPFFKDLFINYYQQLKDRWEIPKISLDTFNWIESYALKESAEELWRCESHELMAIMQ HHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH QAQAWRIQGLVRDCAKLLKKYINQENVVENLIKAHRQYFLDWKVVISEVFNSYGYGLKLL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE PCQSETELRIEFLDFKQETLDLFHQLASFITHLTFSEDLSTSPYYGKCVNACPRLMGADL ECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC TGSTVYDNQFDDLPGSLGELNLSVCGWLRPHHIREIGHQFLNLKKLILDGNVHLNYQSWG CCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHEECCCEEECHHHHH ELHRLQTLISLSTRQCHQLTNDDLKSICRNCSRLEEFDVEECRLLTDQGILEIFSSCSHL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SKFNCNRCDLITDKGLLEIGVRAHLLSQLSIERCSKLTDQGLLYFLRLKPNLKELSIKGC HHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHEECCC EFSLTCLEEVRREYPFLKLLD CCHHHHHHHHHHHCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA