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The map label for this gene is ycbY [C]

Identifier: 46446387

GI number: 46446387

Start: 931994

End: 933136

Strand: Direct

Name: ycbY [C]

Synonym: pc0753

Alternate gene names: 46446387

Gene position: 931994-933136 (Clockwise)

Preceding gene: 46446386

Following gene: 46446388

Centisome position: 38.6

GC content: 40.59

Gene sequence:

>1143_bases
GTGAACGGAGAAAAAAAATTATTATTTGTCAGCTGTGCCTCTGCGCTGGAACCTCTTTTGTTAGAAGAACTTCAAGAGCT
TGGATTGACTGATTTACAAACGGGCTATCGAGGTGTTTTTATCAATCAATGGAATTGGGCGGACATTTATAAAATTAATT
ATGCATCACGCTTGGCCACCCGTGTTTTGTTGCCGCTTTCTCGCTTTAGATGTTTTGACCGAAAATCTTTATATCGACAT
ATTTATGACATTGATTGGTCTCTTTATTTAAAAGAAGGAAATACATTTGCTATTGATGCCAACGTTCATCATCGCGAACT
CCGTAACAGTCTTTTTGCTGCGCAAGTTGTTAAAGATGCGATTTGCGATCAGCTAAGACATAAAGTGGGCAGACGCCCTT
CTGTGGATGTTCAGCAGCCTCATGTTCAACTGAATCTTTATATTCAACATTCACTCGCTATCATTAGTTTTGACACATCT
GGGACTCCTCTACATAAAAGAGGTTATCGACAAGAAACAGTTGAAGCTCCTCTTCAAGAAACATTAGCTGCCGCGATACT
TCGTTTAGCAAAATATTCAGCTGATAAAGTTTTTTTAGATCCTTGCTGCGGATCAGGAACTCTTTTAATTGAAGCGGCAT
TAATGGCAAGCCAAACCCCTCCTGGTTATCTAAGGCAAAAGTGGGGATTCATGAACCATCCTGATTATCAAGCGAATGAA
TGGTTAAAAGTGCGTAATCGATTAGATGAGCATCGCAAAACAATTCAGCCAGGCCACCTTTTTGGGATTGACATCAATAA
AAGTGCCGTTTGGGCCACTAAAACGAATCTAAAAGCTGCAGGTTTTGGGCAAGCTGTTGAAGTCTTGCAAGCAGATTTTA
GAGAGTTTTCACCGACTGTTCCACCCGATCTGATTGTGACCAATCCACCCCATGGTAAGAGATTAGAAGAAGAAGACCAA
CTCCGTCCTTTTTACCGTTCATTGGGCGATTTTATGAAGAAAAAAACTGCTAGGCCTGCACAAGGTTTTGTATTTACAGG
TAATTTGGAACTTGCTAAAGAAGTAGGACTTGCTGCATCTAAACGACATGTTCTCAACAATGGGGGCATTGATTCGCGTT
TACTTGCCTATGAACTGTATTGA

Upstream 100 bases:

>100_bases
AGGAAAGGTTCGGGCTGAAGGAAGAGACTACCTTGTCAAAGATGGGGATGTTATCCTTTTTATGCATCATTAATCTTAAT
CATTCTAAAGGAACTATTAA

Downstream 100 bases:

>100_bases
TCGTGATTTCAGCGGCTCATTAATCTGAATAGTTCGCATATTAAGGAACTTAAGATTTAATTTATTAAAATTTATCTGTT
TTTGAGAGGATTTGCATGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MNGEKKLLFVSCASALEPLLLEELQELGLTDLQTGYRGVFINQWNWADIYKINYASRLATRVLLPLSRFRCFDRKSLYRH
IYDIDWSLYLKEGNTFAIDANVHHRELRNSLFAAQVVKDAICDQLRHKVGRRPSVDVQQPHVQLNLYIQHSLAIISFDTS
GTPLHKRGYRQETVEAPLQETLAAAILRLAKYSADKVFLDPCCGSGTLLIEAALMASQTPPGYLRQKWGFMNHPDYQANE
WLKVRNRLDEHRKTIQPGHLFGIDINKSAVWATKTNLKAAGFGQAVEVLQADFREFSPTVPPDLIVTNPPHGKRLEEEDQ
LRPFYRSLGDFMKKKTARPAQGFVFTGNLELAKEVGLAASKRHVLNNGGIDSRLLAYELY

Sequences:

>Translated_380_residues
MNGEKKLLFVSCASALEPLLLEELQELGLTDLQTGYRGVFINQWNWADIYKINYASRLATRVLLPLSRFRCFDRKSLYRH
IYDIDWSLYLKEGNTFAIDANVHHRELRNSLFAAQVVKDAICDQLRHKVGRRPSVDVQQPHVQLNLYIQHSLAIISFDTS
GTPLHKRGYRQETVEAPLQETLAAAILRLAKYSADKVFLDPCCGSGTLLIEAALMASQTPPGYLRQKWGFMNHPDYQANE
WLKVRNRLDEHRKTIQPGHLFGIDINKSAVWATKTNLKAAGFGQAVEVLQADFREFSPTVPPDLIVTNPPHGKRLEEEDQ
LRPFYRSLGDFMKKKTARPAQGFVFTGNLELAKEVGLAASKRHVLNNGGIDSRLLAYELY
>Mature_380_residues
MNGEKKLLFVSCASALEPLLLEELQELGLTDLQTGYRGVFINQWNWADIYKINYASRLATRVLLPLSRFRCFDRKSLYRH
IYDIDWSLYLKEGNTFAIDANVHHRELRNSLFAAQVVKDAICDQLRHKVGRRPSVDVQQPHVQLNLYIQHSLAIISFDTS
GTPLHKRGYRQETVEAPLQETLAAAILRLAKYSADKVFLDPCCGSGTLLIEAALMASQTPPGYLRQKWGFMNHPDYQANE
WLKVRNRLDEHRKTIQPGHLFGIDINKSAVWATKTNLKAAGFGQAVEVLQADFREFSPTVPPDLIVTNPPHGKRLEEEDQ
LRPFYRSLGDFMKKKTARPAQGFVFTGNLELAKEVGLAASKRHVLNNGGIDSRLLAYELY

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=332, Percent_Identity=33.433734939759, Blast_Score=186, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43206; Mature: 43206

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS51165 THUMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGEKKLLFVSCASALEPLLLEELQELGLTDLQTGYRGVFINQWNWADIYKINYASRLAT
CCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCEEEEECHHHHHHH
RVLLPLSRFRCFDRKSLYRHIYDIDWSLYLKEGNTFAIDANVHHRELRNSLFAAQVVKDA
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHH
ICDQLRHKVGRRPSVDVQQPHVQLNLYIQHSLAIISFDTSGTPLHKRGYRQETVEAPLQE
HHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCHHHCCCHHHHHHHHHHH
TLAAAILRLAKYSADKVFLDPCCGSGTLLIEAALMASQTPPGYLRQKWGFMNHPDYQANE
HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHH
WLKVRNRLDEHRKTIQPGHLFGIDINKSAVWATKTNLKAAGFGQAVEVLQADFREFSPTV
HHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
PPDLIVTNPPHGKRLEEEDQLRPFYRSLGDFMKKKTARPAQGFVFTGNLELAKEVGLAAS
CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHCCHHH
KRHVLNNGGIDSRLLAYELY
HHHHHCCCCCCCEEEEEEEC
>Mature Secondary Structure
MNGEKKLLFVSCASALEPLLLEELQELGLTDLQTGYRGVFINQWNWADIYKINYASRLAT
CCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCEEEEECHHHHHHH
RVLLPLSRFRCFDRKSLYRHIYDIDWSLYLKEGNTFAIDANVHHRELRNSLFAAQVVKDA
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHH
ICDQLRHKVGRRPSVDVQQPHVQLNLYIQHSLAIISFDTSGTPLHKRGYRQETVEAPLQE
HHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCHHHCCCHHHHHHHHHHH
TLAAAILRLAKYSADKVFLDPCCGSGTLLIEAALMASQTPPGYLRQKWGFMNHPDYQANE
HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHH
WLKVRNRLDEHRKTIQPGHLFGIDINKSAVWATKTNLKAAGFGQAVEVLQADFREFSPTV
HHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
PPDLIVTNPPHGKRLEEEDQLRPFYRSLGDFMKKKTARPAQGFVFTGNLELAKEVGLAAS
CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHCCHHH
KRHVLNNGGIDSRLLAYELY
HHHHHCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]