Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46446042
Identifier: 46446042
GI number: 46446042
Start: 544280
End: 545284
Strand: Direct
Name: 46446042
Synonym: pc0408
Alternate gene names: NA
Gene position: 544280-545284 (Clockwise)
Preceding gene: 46446038
Following gene: 46446043
Centisome position: 22.54
GC content: 36.42
Gene sequence:
>1005_bases ATGAATCTCTTAAGTAGATGCTCAAATGCAGTGATAGATTTCCCTCAGGCTGCCTTCCAGTCAATAGGAAAAGGTGTTAT TAAGCTCAAGAAATATAGAAATAATCCAGAAATTTTCCAAAAAACTGCGCAGATAGCTATCAGTATTATCCAATATTATA ATTGGCATCATGGGATAGTTGTCTATCCAAAGTTAGAACGGACGTTATCTACTGCGAATATGCATGATTTTTATCAGATT TTAAAAGAACCGCGTGGTTTTTTATGTCCTATAAAAGCTGAATCGATTAATGCTCCGCAAGCTTTAGAAAATATCGTAAA CAAGCTATGTGTAATTTTTCCAAACTTTGATAGGGGGGCTTTAAGACAAACTGTTCAGAAGCATTTGCAAGCTCAGTTAG ACAGTATGGTTGCTAATGACGATGCTTACACTTCCACAGAAGATTTTGCGTTAGCACTGCAGAATCGTTTGCAAGAACCT ATAGCTGATTTAACAAGTAGCTCCATTCTTAATGTAGTCGATTTAAATGATGTGAAAATTCCTGTTATCCATCGAACACT TGTAGATAAAATTGTTGATGTGACAGGGCTTTTTATTAATATGGGTTGCGTAGGTCTTTATACCAATGCTTGGAATCTAG TTGATACAGGTGCTTGGGCAATGCGCATTGGACAGAATAGTGGATTTGGCTGGGTAAAATATCAGTCATTAGAAACATGG GTAAGAGGTGGTGTAACGTTTGCTTTCGGCGCTAAATTATTTGAAGCAACACGTAAATTATTAGATGAAAAACTCACGCC AACCGCCAGAAGAAATGCTAAAATTGACGCTATCAGCTCTCTTTTTGAATTTGTTTATCAAGGAGTTGGCTATTTAAATC ATCGAAATATTTTAAAAGTTTCTCCAGGACTTTTTTATGCAGGGGCTATTATTACAAAAGGAGTTGGTATTGCCTGCGTC CTTGCAAGACCAAAACCAAATTATTTTGAAACAATGACTGCTTAG
Upstream 100 bases:
>100_bases AAATTTTAGTCTTTATTTATTTAAATTAATCAGCGCCTTGATTTTTAATCCAGGGATTGAATATGATAAAATTCCTACAA AATTTCTCGAGGAGTAAGAA
Downstream 100 bases:
>100_bases GCGGTTAATCATCAGAAATATAACGATATAAGGATTTAATATGAATGCCATCACTTCCCATATCTCTCATGGGGTTAACT CCGCTCTTTTCACTATTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MNLLSRCSNAVIDFPQAAFQSIGKGVIKLKKYRNNPEIFQKTAQIAISIIQYYNWHHGIVVYPKLERTLSTANMHDFYQI LKEPRGFLCPIKAESINAPQALENIVNKLCVIFPNFDRGALRQTVQKHLQAQLDSMVANDDAYTSTEDFALALQNRLQEP IADLTSSSILNVVDLNDVKIPVIHRTLVDKIVDVTGLFINMGCVGLYTNAWNLVDTGAWAMRIGQNSGFGWVKYQSLETW VRGGVTFAFGAKLFEATRKLLDEKLTPTARRNAKIDAISSLFEFVYQGVGYLNHRNILKVSPGLFYAGAIITKGVGIACV LARPKPNYFETMTA
Sequences:
>Translated_334_residues MNLLSRCSNAVIDFPQAAFQSIGKGVIKLKKYRNNPEIFQKTAQIAISIIQYYNWHHGIVVYPKLERTLSTANMHDFYQI LKEPRGFLCPIKAESINAPQALENIVNKLCVIFPNFDRGALRQTVQKHLQAQLDSMVANDDAYTSTEDFALALQNRLQEP IADLTSSSILNVVDLNDVKIPVIHRTLVDKIVDVTGLFINMGCVGLYTNAWNLVDTGAWAMRIGQNSGFGWVKYQSLETW VRGGVTFAFGAKLFEATRKLLDEKLTPTARRNAKIDAISSLFEFVYQGVGYLNHRNILKVSPGLFYAGAIITKGVGIACV LARPKPNYFETMTA >Mature_334_residues MNLLSRCSNAVIDFPQAAFQSIGKGVIKLKKYRNNPEIFQKTAQIAISIIQYYNWHHGIVVYPKLERTLSTANMHDFYQI LKEPRGFLCPIKAESINAPQALENIVNKLCVIFPNFDRGALRQTVQKHLQAQLDSMVANDDAYTSTEDFALALQNRLQEP IADLTSSSILNVVDLNDVKIPVIHRTLVDKIVDVTGLFINMGCVGLYTNAWNLVDTGAWAMRIGQNSGFGWVKYQSLETW VRGGVTFAFGAKLFEATRKLLDEKLTPTARRNAKIDAISSLFEFVYQGVGYLNHRNILKVSPGLFYAGAIITKGVGIACV LARPKPNYFETMTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37340; Mature: 37340
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLLSRCSNAVIDFPQAAFQSIGKGVIKLKKYRNNPEIFQKTAQIAISIIQYYNWHHGIV CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEE VYPKLERTLSTANMHDFYQILKEPRGFLCPIKAESINAPQALENIVNKLCVIFPNFDRGA EEECHHHHHHHCCHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHEEECCCCCHHH LRQTVQKHLQAQLDSMVANDDAYTSTEDFALALQNRLQEPIADLTSSSILNVVDLNDVKI HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEE PVIHRTLVDKIVDVTGLFINMGCVGLYTNAWNLVDTGAWAMRIGQNSGFGWVKYQSLETW HHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCHHCCCHHEEEECCCCCCCEEEHHHHHHH VRGGVTFAFGAKLFEATRKLLDEKLTPTARRNAKIDAISSLFEFVYQGVGYLNHRNILKV HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE SPGLFYAGAIITKGVGIACVLARPKPNYFETMTA CCCHHHHHHHHHCCCCEEEEEECCCCCCHHCCCC >Mature Secondary Structure MNLLSRCSNAVIDFPQAAFQSIGKGVIKLKKYRNNPEIFQKTAQIAISIIQYYNWHHGIV CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEE VYPKLERTLSTANMHDFYQILKEPRGFLCPIKAESINAPQALENIVNKLCVIFPNFDRGA EEECHHHHHHHCCHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHEEECCCCCHHH LRQTVQKHLQAQLDSMVANDDAYTSTEDFALALQNRLQEPIADLTSSSILNVVDLNDVKI HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEE PVIHRTLVDKIVDVTGLFINMGCVGLYTNAWNLVDTGAWAMRIGQNSGFGWVKYQSLETW HHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCHHCCCHHEEEECCCCCCCEEEHHHHHHH VRGGVTFAFGAKLFEATRKLLDEKLTPTARRNAKIDAISSLFEFVYQGVGYLNHRNILKV HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE SPGLFYAGAIITKGVGIACVLARPKPNYFETMTA CCCHHHHHHHHHCCCCEEEEEECCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA