Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446043

Identifier: 46446043

GI number: 46446043

Start: 545325

End: 546221

Strand: Direct

Name: 46446043

Synonym: pc0409

Alternate gene names: NA

Gene position: 545325-546221 (Clockwise)

Preceding gene: 46446042

Following gene: 46446044

Centisome position: 22.59

GC content: 35.79

Gene sequence:

>897_bases
ATGAATGCCATCACTTCCCATATCTCTCATGGGGTTAACTCCGCTCTTTTCACTATTGGTGAGGGAGTTAGTCTAGTTTC
CAGTGAAGTTAAAAAAGGAATTAGGTACGTAGGAGAAGGTCCGAGCAGAGCTGCTTACGATATTTATGATTTACGTCACG
AAGGGTTTGAAAAATGGACAAAAGCTGCAATTGCCAATTTAAAATTAATTGGGCGAATAAAGCATACAAACGTATTTAAT
GCTGCCATTGAAACTTTAGAGGGTCAAAAAAACCTTTACTATGCAACAAAATTTATTGGATCAGCCTGTGACTTTATTCA
ACGTGACAAGGTGACAAAAAAAGTTAGTTTGACAATTCCAAAATATAAAGAAGGAACAAATTGGGTCGCGGTTCTCTATG
GAATAGGCAATTTTTTAGATACTGCAAGATTTTTGCAAAAACATGAAGTTGTTGCGTTTCAAACTGTTTCTAGATTAGGT
GCTGCAATTGGTTCTATTAAAATATCTTACTTAAAAGGTAAACGTTTAGAACAAATTTCCTTAGATCAAATTCCCGTGCT
TAGCAATGTTTTTTATTCGCCAAAAGATATATTTATTTTTGCTGCCTCAGGAATCGAGATTTCGCGCTTTGTCAAAGCGT
TCGTTAATGTTGAAGGAGAGACAGGGGAAGATCGTACAAGAAAGAGAAAAGAAATTTTATCGGATATAAGTACGTGGCTT
AAATTGACTGGTAGCATTGGTAAAATGATCTTAATTGGTTGTGGAAGTCGCTATGGAACTGCATTTTGGTTCACATTAGT
GGATGTAATTACACAAAATGCTGGTTTAATTAGATATTGGAAAGATCGTTCTAGAGATAGAGAGGTTCGCTTTAATAATC
CAGCAATAGCAGCGTAA

Upstream 100 bases:

>100_bases
GGTATTGCCTGCGTCCTTGCAAGACCAAAACCAAATTATTTTGAAACAATGACTGCTTAGGCGGTTAATCATCAGAAATA
TAACGATATAAGGATTTAAT

Downstream 100 bases:

>100_bases
ATTGCTTTTATTTACACTCAGAATAAGGTACTTATTCTGAGTGATTATTCGTAAATATTCTTACGTCGTTCATACAAGGC
AGAAAATGGGAGTTTGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNAITSHISHGVNSALFTIGEGVSLVSSEVKKGIRYVGEGPSRAAYDIYDLRHEGFEKWTKAAIANLKLIGRIKHTNVFN
AAIETLEGQKNLYYATKFIGSACDFIQRDKVTKKVSLTIPKYKEGTNWVAVLYGIGNFLDTARFLQKHEVVAFQTVSRLG
AAIGSIKISYLKGKRLEQISLDQIPVLSNVFYSPKDIFIFAASGIEISRFVKAFVNVEGETGEDRTRKRKEILSDISTWL
KLTGSIGKMILIGCGSRYGTAFWFTLVDVITQNAGLIRYWKDRSRDREVRFNNPAIAA

Sequences:

>Translated_298_residues
MNAITSHISHGVNSALFTIGEGVSLVSSEVKKGIRYVGEGPSRAAYDIYDLRHEGFEKWTKAAIANLKLIGRIKHTNVFN
AAIETLEGQKNLYYATKFIGSACDFIQRDKVTKKVSLTIPKYKEGTNWVAVLYGIGNFLDTARFLQKHEVVAFQTVSRLG
AAIGSIKISYLKGKRLEQISLDQIPVLSNVFYSPKDIFIFAASGIEISRFVKAFVNVEGETGEDRTRKRKEILSDISTWL
KLTGSIGKMILIGCGSRYGTAFWFTLVDVITQNAGLIRYWKDRSRDREVRFNNPAIAA
>Mature_298_residues
MNAITSHISHGVNSALFTIGEGVSLVSSEVKKGIRYVGEGPSRAAYDIYDLRHEGFEKWTKAAIANLKLIGRIKHTNVFN
AAIETLEGQKNLYYATKFIGSACDFIQRDKVTKKVSLTIPKYKEGTNWVAVLYGIGNFLDTARFLQKHEVVAFQTVSRLG
AAIGSIKISYLKGKRLEQISLDQIPVLSNVFYSPKDIFIFAASGIEISRFVKAFVNVEGETGEDRTRKRKEILSDISTWL
KLTGSIGKMILIGCGSRYGTAFWFTLVDVITQNAGLIRYWKDRSRDREVRFNNPAIAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33288; Mature: 33288

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAITSHISHGVNSALFTIGEGVSLVSSEVKKGIRYVGEGPSRAAYDIYDLRHEGFEKWT
CCHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
KAAIANLKLIGRIKHTNVFNAAIETLEGQKNLYYATKFIGSACDFIQRDKVTKKVSLTIP
HHHHHHHHHEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC
KYKEGTNWVAVLYGIGNFLDTARFLQKHEVVAFQTVSRLGAAIGSIKISYLKGKRLEQIS
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCC
LDQIPVLSNVFYSPKDIFIFAASGIEISRFVKAFVNVEGETGEDRTRKRKEILSDISTWL
CCCCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
KLTGSIGKMILIGCGSRYGTAFWFTLVDVITQNAGLIRYWKDRSRDREVRFNNPAIAA
HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MNAITSHISHGVNSALFTIGEGVSLVSSEVKKGIRYVGEGPSRAAYDIYDLRHEGFEKWT
CCHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
KAAIANLKLIGRIKHTNVFNAAIETLEGQKNLYYATKFIGSACDFIQRDKVTKKVSLTIP
HHHHHHHHHEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC
KYKEGTNWVAVLYGIGNFLDTARFLQKHEVVAFQTVSRLGAAIGSIKISYLKGKRLEQIS
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCC
LDQIPVLSNVFYSPKDIFIFAASGIEISRFVKAFVNVEGETGEDRTRKRKEILSDISTWL
CCCCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
KLTGSIGKMILIGCGSRYGTAFWFTLVDVITQNAGLIRYWKDRSRDREVRFNNPAIAA
HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA