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The map label for this gene is apl [H]

Identifier: 45657466

GI number: 45657466

Start: 1953230

End: 1953871

Strand: Direct

Name: apl [H]

Synonym: LIC11594

Alternate gene names: 45657466

Gene position: 1953230-1953871 (Clockwise)

Preceding gene: 45657459

Following gene: 45657468

Centisome position: 45.67

GC content: 35.05

Gene sequence:

>642_bases
ATGACTTTTCACGAAACTCTGCTTCAAATTCTCAATCGTTTTTCCGAAACGAACCCTATTTTTCTCTGGCTCTTTTTTGC
CTTTTCTAATTTTGCGGAAAACGTTTTTCCTCCTTGGCCTGGAGATACGGTTACTGCTTTTGGAGGATTTTTAGTAGCAA
GAAATTTACCTGCATTTGGCTGGATAGAATTGATTACGAGCACATTGATAGGAAACCTTTTTGGGGCCTGGGTAATGTAT
CGTTTTGGTCAAATTTTTCTGGATTGGGCCAAGAAAAAAGAATTTCCTTTTAAAGATTCTATTTACGATGAGCAATCTAT
AGAAAAGACATTAGCTTGGTTTCGAAAAAATTCTATTTTAGTTGTTTTGTTTAGTCGGTTTTCGGCGGGGATTCGATTTT
TTGTTTCTATTGTTGCTGGAATGGTAAAGATGAACCCGATTCTTTTTTTTGGATGTTTTAGCATCGCGGTAGTTCTTTGG
TGTGGAATTTTAATTATTTCCGGTTTTTTTCTGGGTTCTAATTGGGAAAATGTTTTAGGTTTTTTAGAAATTTATAATAA
AATCATTATCACTTTGGTGGTTCTTGGGGTAATTCTGTTTTTTTGGCGTCGAAGACAAAAAACGGCTAGAACAAATTCTT
AG

Upstream 100 bases:

>100_bases
GATCTAAATTTGAATGGTTTAAGAATTGTAAACAAATAGGATTCACTTTTTTTACTTGAACCTTACGCTTGATCACTGAC
AATTCTTTTATTCTAACTTC

Downstream 100 bases:

>100_bases
ACTTCGTGTGAGTTCCCACATTTTAAAGTAAAACTTAGATTTCGTGTGAGTTCCCACATTTTAAAGTAAAACTTAGATTT
CGTGTGAGTTCCCACATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTFHETLLQILNRFSETNPIFLWLFFAFSNFAENVFPPWPGDTVTAFGGFLVARNLPAFGWIELITSTLIGNLFGAWVMY
RFGQIFLDWAKKKEFPFKDSIYDEQSIEKTLAWFRKNSILVVLFSRFSAGIRFFVSIVAGMVKMNPILFFGCFSIAVVLW
CGILIISGFFLGSNWENVLGFLEIYNKIIITLVVLGVILFFWRRRQKTARTNS

Sequences:

>Translated_213_residues
MTFHETLLQILNRFSETNPIFLWLFFAFSNFAENVFPPWPGDTVTAFGGFLVARNLPAFGWIELITSTLIGNLFGAWVMY
RFGQIFLDWAKKKEFPFKDSIYDEQSIEKTLAWFRKNSILVVLFSRFSAGIRFFVSIVAGMVKMNPILFFGCFSIAVVLW
CGILIISGFFLGSNWENVLGFLEIYNKIIITLVVLGVILFFWRRRQKTARTNS
>Mature_212_residues
TFHETLLQILNRFSETNPIFLWLFFAFSNFAENVFPPWPGDTVTAFGGFLVARNLPAFGWIELITSTLIGNLFGAWVMYR
FGQIFLDWAKKKEFPFKDSIYDEQSIEKTLAWFRKNSILVVLFSRFSAGIRFFVSIVAGMVKMNPILFFGCFSIAVVLWC
GILIISGFFLGSNWENVLGFLEIYNKIIITLVVLGVILFFWRRRQKTARTNS

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24638; Mature: 24507

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFHETLLQILNRFSETNPIFLWLFFAFSNFAENVFPPWPGDTVTAFGGFLVARNLPAFG
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
WIELITSTLIGNLFGAWVMYRFGQIFLDWAKKKEFPFKDSIYDEQSIEKTLAWFRKNSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHH
VVLFSRFSAGIRFFVSIVAGMVKMNPILFFGCFSIAVVLWCGILIISGFFLGSNWENVLG
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FLEIYNKIIITLVVLGVILFFWRRRQKTARTNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TFHETLLQILNRFSETNPIFLWLFFAFSNFAENVFPPWPGDTVTAFGGFLVARNLPAFG
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
WIELITSTLIGNLFGAWVMYRFGQIFLDWAKKKEFPFKDSIYDEQSIEKTLAWFRKNSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHH
VVLFSRFSAGIRFFVSIVAGMVKMNPILFFGCFSIAVVLWCGILIISGFFLGSNWENVLG
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FLEIYNKIIITLVVLGVILFFWRRRQKTARTNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]