| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is pdtaS [H]
Identifier: 45657309
GI number: 45657309
Start: 1762262
End: 1763731
Strand: Direct
Name: pdtaS [H]
Synonym: LIC11433
Alternate gene names: 45657309
Gene position: 1762262-1763731 (Clockwise)
Preceding gene: 45657307
Following gene: 45657310
Centisome position: 41.2
GC content: 35.31
Gene sequence:
>1470_bases TTGATTGACTTTCCTTCCAAATTTCTAAGCATGCCCAATTGTAGGATGGAAAACTTGGGTTCTATGGAGCCGATTTCAAT CAAACATTATCAGTTCTTTTTTGATCTTTCTCAGGATGGTTTAGCGATTCATTCTGAAGGAAAAATTTTAAGAGCAAACG ATACATTGATTCGGATGCTTGGTTATGATTCTATCGAAGAAGTGATCGGAAAACCTGTTCTTCAATTTGTTCATCCAAGA TCTCAAAGTGTTGTAAAAGAAAGAATTCAGAAAATGAGCCAAGAGGGCATGGTAGTCGGGGCCATTGAAGAAGAATTCAT TCGAAAGGACGGCTCTACTTTATTTGTAGAAGTGACCGCCACTGCTTTTTTTGAAAACGAAGTTCAGTATTTTCAAGTAG TAGTCAAAAATATCAATTTTAGAAAACGAATGGAACTAGAGCTAGAAAGGCTTCGTTCTAAACTCAAAATTACTCAGGAA AGACTTCTTGGGGTAATTGAAGGTACCAAGGACGCTATCTGTGCCGTTGATATTCATTTTAGAGTGATCGCTTTTAATTC TTCCTTTGAACTTAGTTTTTGGAAACTCTATGGTAAAAAAATAGAGGAAGGAAATTTACTTCCAGAACTCATTTTGGATC CTGTGGAACGGAGTGTGGTTATCGAAAACTGGAGTCGCGCACTTCGAGGAGAAGTATATACTACCGAAAGAACCATGCAA GGTTTAGTGCAAGATTCGGCTATATTCGAAATTAGTTATAGTTCTATTCGAGATTCTTCTCATAATCTGATTGGTGCGAC TCAGATCATTCGGGATATTACGGAAAGAAAACACGGCGAAGAAAAACTGAAAAAAACTTTAGAAGAAAAAGAAGTGATGT TAAAAGAGATTCATCACAGGGTAAAGAACAATCTACAAGTGGTGACTAGTCTTTTGAGTTTACAATCGGAACACTACGGG AACGAAAGAATTTCTCATATTCTTAAGGAATGTGGACGTAGAATTCAATCTATGGCTTTGATCCATAAAGAATTGTATCA ATCCGAGAATATTACAAAAATCGATTTTTATGATTATCTAAATACTTTGTTAGTAAGCCTTCTTCATTCTTTTGGAAAAG AAAAAAAAGTAGAGTTTAAAATTTCTTCCAAACCAAATTTTGTTTCTATCGAAACAGCGATTCCATTGGGATTGATTGTC AATGAACTTGCTACCAATTCTTTAAAATACGCTTTTTCTAACGGAAAGGACGGAATGATTTCGGTACATCTTAGATTGGA CGTGTTGGAATCAATATTGGAAGTTGAAGACAACGGAATCGGTATGCCGGAAGAATTCGATTTGGATAAATCAGAATCTT TGGGTTTGAAACTTGTAGGAATTCTTGCAAGACAATTGAGAGGTAAGTTCATTCTTCTTCCTTCTGGAAAAGAAAAAGGA ACTAAATTTCAAGTTATATTCAAAAGTTAA
Upstream 100 bases:
>100_bases CAAAATAGAATTTTTCAATCTTGAAAAACCCTTTATTTCTTGAGAGATTAATTTTGACATAAAATCTTAATCTTTTGATA ATTTCGGACGTTTATCGGCT
Downstream 100 bases:
>100_bases AAACACTTGTCCTTATACTTTGAAACTTGAATTATCCATCTTATGAATTTAATTTCCGTCGATAAGATTTCCAAAGAAAT CGGTTCTAAGGTTTTGCTTA
Product: histidine kinase sensor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 489; Mature: 489
Protein sequence:
>489_residues MIDFPSKFLSMPNCRMENLGSMEPISIKHYQFFFDLSQDGLAIHSEGKILRANDTLIRMLGYDSIEEVIGKPVLQFVHPR SQSVVKERIQKMSQEGMVVGAIEEEFIRKDGSTLFVEVTATAFFENEVQYFQVVVKNINFRKRMELELERLRSKLKITQE RLLGVIEGTKDAICAVDIHFRVIAFNSSFELSFWKLYGKKIEEGNLLPELILDPVERSVVIENWSRALRGEVYTTERTMQ GLVQDSAIFEISYSSIRDSSHNLIGATQIIRDITERKHGEEKLKKTLEEKEVMLKEIHHRVKNNLQVVTSLLSLQSEHYG NERISHILKECGRRIQSMALIHKELYQSENITKIDFYDYLNTLLVSLLHSFGKEKKVEFKISSKPNFVSIETAIPLGLIV NELATNSLKYAFSNGKDGMISVHLRLDVLESILEVEDNGIGMPEEFDLDKSESLGLKLVGILARQLRGKFILLPSGKEKG TKFQVIFKS
Sequences:
>Translated_489_residues MIDFPSKFLSMPNCRMENLGSMEPISIKHYQFFFDLSQDGLAIHSEGKILRANDTLIRMLGYDSIEEVIGKPVLQFVHPR SQSVVKERIQKMSQEGMVVGAIEEEFIRKDGSTLFVEVTATAFFENEVQYFQVVVKNINFRKRMELELERLRSKLKITQE RLLGVIEGTKDAICAVDIHFRVIAFNSSFELSFWKLYGKKIEEGNLLPELILDPVERSVVIENWSRALRGEVYTTERTMQ GLVQDSAIFEISYSSIRDSSHNLIGATQIIRDITERKHGEEKLKKTLEEKEVMLKEIHHRVKNNLQVVTSLLSLQSEHYG NERISHILKECGRRIQSMALIHKELYQSENITKIDFYDYLNTLLVSLLHSFGKEKKVEFKISSKPNFVSIETAIPLGLIV NELATNSLKYAFSNGKDGMISVHLRLDVLESILEVEDNGIGMPEEFDLDKSESLGLKLVGILARQLRGKFILLPSGKEKG TKFQVIFKS >Mature_489_residues MIDFPSKFLSMPNCRMENLGSMEPISIKHYQFFFDLSQDGLAIHSEGKILRANDTLIRMLGYDSIEEVIGKPVLQFVHPR SQSVVKERIQKMSQEGMVVGAIEEEFIRKDGSTLFVEVTATAFFENEVQYFQVVVKNINFRKRMELELERLRSKLKITQE RLLGVIEGTKDAICAVDIHFRVIAFNSSFELSFWKLYGKKIEEGNLLPELILDPVERSVVIENWSRALRGEVYTTERTMQ GLVQDSAIFEISYSSIRDSSHNLIGATQIIRDITERKHGEEKLKKTLEEKEVMLKEIHHRVKNNLQVVTSLLSLQSEHYG NERISHILKECGRRIQSMALIHKELYQSENITKIDFYDYLNTLLVSLLHSFGKEKKVEFKISSKPNFVSIETAIPLGLIV NELATNSLKYAFSNGKDGMISVHLRLDVLESILEVEDNGIGMPEEFDLDKSESLGLKLVGILARQLRGKFILLPSGKEKG TKFQVIFKS
Specific function: Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR022066 - InterPro: IPR011495 - InterPro: IPR005467 [H]
Pfam domain/function: PF12282 H_kinase_N; PF02518 HATPase_c; PF07568 HisKA_2 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 56012; Mature: 56012
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDFPSKFLSMPNCRMENLGSMEPISIKHYQFFFDLSQDGLAIHSEGKILRANDTLIRML CCCCCHHHHCCCCCCHHCCCCCCCCEEEEEEEEEEECCCCEEEECCCCEEECCCCEEEHH GYDSIEEVIGKPVLQFVHPRSQSVVKERIQKMSQEGMVVGAIEEEFIRKDGSTLFVEVTA CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCEEEEEEEE TAFFENEVQYFQVVVKNINFRKRMELELERLRSKLKITQERLLGVIEGTKDAICAVDIHF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE RVIAFNSSFELSFWKLYGKKIEEGNLLPELILDPVERSVVIENWSRALRGEVYTTERTMQ EEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCEEEHHHHHH GLVQDSAIFEISYSSIRDSSHNLIGATQIIRDITERKHGEEKLKKTLEEKEVMLKEIHHR HHHHCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VKNNLQVVTSLLSLQSEHYGNERISHILKECGRRIQSMALIHKELYQSENITKIDFYDYL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH NTLLVSLLHSFGKEKKVEFKISSKPNFVSIETAIPLGLIVNELATNSLKYAFSNGKDGMI HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHCHHHHHHHHHHHCCHHEEECCCCCCEE SVHLRLDVLESILEVEDNGIGMPEEFDLDKSESLGLKLVGILARQLRGKFILLPSGKEKG EEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC TKFQVIFKS CEEEEEEEC >Mature Secondary Structure MIDFPSKFLSMPNCRMENLGSMEPISIKHYQFFFDLSQDGLAIHSEGKILRANDTLIRML CCCCCHHHHCCCCCCHHCCCCCCCCEEEEEEEEEEECCCCEEEECCCCEEECCCCEEEHH GYDSIEEVIGKPVLQFVHPRSQSVVKERIQKMSQEGMVVGAIEEEFIRKDGSTLFVEVTA CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCEEEEEEEE TAFFENEVQYFQVVVKNINFRKRMELELERLRSKLKITQERLLGVIEGTKDAICAVDIHF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE RVIAFNSSFELSFWKLYGKKIEEGNLLPELILDPVERSVVIENWSRALRGEVYTTERTMQ EEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCEEEHHHHHH GLVQDSAIFEISYSSIRDSSHNLIGATQIIRDITERKHGEEKLKKTLEEKEVMLKEIHHR HHHHCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VKNNLQVVTSLLSLQSEHYGNERISHILKECGRRIQSMALIHKELYQSENITKIDFYDYL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH NTLLVSLLHSFGKEKKVEFKISSKPNFVSIETAIPLGLIVNELATNSLKYAFSNGKDGMI HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHCHHHHHHHHHHHCCHHEEECCCCCCEE SVHLRLDVLESILEVEDNGIGMPEEFDLDKSESLGLKLVGILARQLRGKFILLPSGKEKG EEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC TKFQVIFKS CEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]