Click here to switch to the map view.

The map label for this gene is yfmR [H]

Identifier: 45657310

GI number: 45657310

Start: 1763774

End: 1765645

Strand: Direct

Name: yfmR [H]

Synonym: LIC11434

Alternate gene names: 45657310

Gene position: 1763774-1765645 (Clockwise)

Preceding gene: 45657309

Following gene: 45657314

Centisome position: 41.24

GC content: 35.68

Gene sequence:

>1872_bases
ATGAATTTAATTTCCGTCGATAAGATTTCCAAAGAAATCGGTTCTAAGGTTTTGCTTAATCAAATCAGTTTTGGAATCAA
CGAAGGGGAAAAAATAGGAATTTTAGGAATTAACGGTTCCGGTAAGACTACCCTTTTGAAAATGCTTGCAGGGATAGAAG
TTCCTGATAACGGACAGATCTTAAGAAATAAAATTTTAAAGATTGCAGTTTTGTCTCAGTCACCTTCCTTCGATTCGAAT
CATACTATCTTAGAACATATTTTTTCCGGTCAAAGTCCTATTTTAAAAACGATTCGTTCTTACGAGTCAATTTGTGAACG
TTTAGGTTCAGGCGATTCTGAAGTTGAAAAAGAATACAATCGTTTGATGCAGGAAATGGACAGACTTGGAGCATGGGAAC
TAGAGTCTTGGTTTCGGTCTATTTTAAAAGAATTAGAGATTCTAGATCTTAACGTAAAGATGGGCTCTTTGTCTGGTGGA
ATGCTTAAAAAAGTTGTTTTGGTTCAAACGCTCATTGAAGAATCCAATCTTCTTGTGTTAGACGAACCAACCAATCATTT
GGACGTGGAAACGATTCTTTGGCTTCAAGATTATCTAGTTGAAACTAAAAAAGCGATTCTACTGGTTACTCATGATCGTT
ATTTTTTGGAAGAAGTAACGGATCGTATCTTGGAGTTGGAAAGTGGAAATTTAAATTCGTTTCCGGGAAATTTTGGATTT
TATTTAGAAAAAAAAGCAGAGGCTGAAGTAATCCGTGAAAAAACGGAACAGAAAGAAAAACAGTTTCTTAAAAAGGAATT
AGAATGGCTTCGTAGACAACCGAAGGCGAGAGGAACCAAACAAAAAGGCAGAACCGACCGCGCTCTCGAAGTGTTAAATC
GTAAAAAGTCAGGAAAAGAAATTGTTTTGGATTTTTCCGTTTCTGGTAAAAGGCTCGGAAAAAAGATTTTGGAACTGAAA
AATGTTCGTAAATCGTATCATAAACCGATTATATATGGTTTTTCTTATACGTTTAAAAATGGGGAACGAATTGGAATTGT
AGGACCGAATGGAGCTGGAAAGTCAACACTTCTGGATATGATCGTAGGACGGGAAAAACCTGATTCCGGAGACGTAAGTG
TGGGAATGAATACGAATTTTGGTTATTTCGATCAAGTTTCCAAGGAACTTTCGGGTGATATGAGGGTGATCGAATATATC
AAAAAGGAATGCGGGATGTCGATCAAAATGAACGACGATCGAGTTTTAAGCGCTGCGGATATGTTGGAACTATTCCTTTT
TGATACTAGATTACAAGGCGGTTATATCAAAAATTTATCCGGTGGAGAAAAAAGAAGACTCTATCTCGTTTCAATTTTGA
TGACCAATCCTAACTTTTTGATTTTGGACGAACCGACAAACGATTTGGACATTAGAACACTTTCCGTTTTAGAAGAATTT
TTAGCCGAGTTTGACGGTTGTGTTCTTGTGGTTTCTCATGATCGATATTTTATGGACCGGACAGTAGATTATCTTTTTAC
TTTTCAAGGAGAAGGAATTGTAGAAAAATTTCCAGGAAACTATTCCGAATATTTAGAATATACTAATTATCTAAATAAAC
AAAAAGAAAAAAAAGAATCGGAAATTAAACCCAAGGAAGCAGATTCTTCTAAAAATAAAAAAGGAATGAGTTTTCAACAG
AAAAAAGAACTAGAAGTTTTGGAGTCCGAAATTTCATTGTTGGAAAAAGAAGAACGTAGTCTTACGGATATTCTGCAATC
TGGAGCGACAAAACCGGAAGAGTTAGCCAATGTCGGAAATCGTCTAACTGAAATTCATTCTGCACTATCTTTGAAGTTAG
ATCGTTGGGAAGAACTTCAAAATCTTATGTAG

Upstream 100 bases:

>100_bases
TCTTCTTCCTTCTGGAAAAGAAAAAGGAACTAAATTTCAAGTTATATTCAAAAGTTAAAAACACTTGTCCTTATACTTTG
AAACTTGAATTATCCATCTT

Downstream 100 bases:

>100_bases
GGTTTGTTCCAAAACCTCAAAGAATTTTATGCGATAATTCTTTAGAAATTTTTAATAAAATGCAGTAGTTCCTACAATTA
GGCCGAATTTGGCAATTTGT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 623

Protein sequence:

>623_residues
MNLISVDKISKEIGSKVLLNQISFGINEGEKIGILGINGSGKTTLLKMLAGIEVPDNGQILRNKILKIAVLSQSPSFDSN
HTILEHIFSGQSPILKTIRSYESICERLGSGDSEVEKEYNRLMQEMDRLGAWELESWFRSILKELEILDLNVKMGSLSGG
MLKKVVLVQTLIEESNLLVLDEPTNHLDVETILWLQDYLVETKKAILLVTHDRYFLEEVTDRILELESGNLNSFPGNFGF
YLEKKAEAEVIREKTEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKSGKEIVLDFSVSGKRLGKKILELK
NVRKSYHKPIIYGFSYTFKNGERIGIVGPNGAGKSTLLDMIVGREKPDSGDVSVGMNTNFGYFDQVSKELSGDMRVIEYI
KKECGMSIKMNDDRVLSAADMLELFLFDTRLQGGYIKNLSGGEKRRLYLVSILMTNPNFLILDEPTNDLDIRTLSVLEEF
LAEFDGCVLVVSHDRYFMDRTVDYLFTFQGEGIVEKFPGNYSEYLEYTNYLNKQKEKKESEIKPKEADSSKNKKGMSFQQ
KKELEVLESEISLLEKEERSLTDILQSGATKPEELANVGNRLTEIHSALSLKLDRWEELQNLM

Sequences:

>Translated_623_residues
MNLISVDKISKEIGSKVLLNQISFGINEGEKIGILGINGSGKTTLLKMLAGIEVPDNGQILRNKILKIAVLSQSPSFDSN
HTILEHIFSGQSPILKTIRSYESICERLGSGDSEVEKEYNRLMQEMDRLGAWELESWFRSILKELEILDLNVKMGSLSGG
MLKKVVLVQTLIEESNLLVLDEPTNHLDVETILWLQDYLVETKKAILLVTHDRYFLEEVTDRILELESGNLNSFPGNFGF
YLEKKAEAEVIREKTEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKSGKEIVLDFSVSGKRLGKKILELK
NVRKSYHKPIIYGFSYTFKNGERIGIVGPNGAGKSTLLDMIVGREKPDSGDVSVGMNTNFGYFDQVSKELSGDMRVIEYI
KKECGMSIKMNDDRVLSAADMLELFLFDTRLQGGYIKNLSGGEKRRLYLVSILMTNPNFLILDEPTNDLDIRTLSVLEEF
LAEFDGCVLVVSHDRYFMDRTVDYLFTFQGEGIVEKFPGNYSEYLEYTNYLNKQKEKKESEIKPKEADSSKNKKGMSFQQ
KKELEVLESEISLLEKEERSLTDILQSGATKPEELANVGNRLTEIHSALSLKLDRWEELQNLM
>Mature_623_residues
MNLISVDKISKEIGSKVLLNQISFGINEGEKIGILGINGSGKTTLLKMLAGIEVPDNGQILRNKILKIAVLSQSPSFDSN
HTILEHIFSGQSPILKTIRSYESICERLGSGDSEVEKEYNRLMQEMDRLGAWELESWFRSILKELEILDLNVKMGSLSGG
MLKKVVLVQTLIEESNLLVLDEPTNHLDVETILWLQDYLVETKKAILLVTHDRYFLEEVTDRILELESGNLNSFPGNFGF
YLEKKAEAEVIREKTEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKSGKEIVLDFSVSGKRLGKKILELK
NVRKSYHKPIIYGFSYTFKNGERIGIVGPNGAGKSTLLDMIVGREKPDSGDVSVGMNTNFGYFDQVSKELSGDMRVIEYI
KKECGMSIKMNDDRVLSAADMLELFLFDTRLQGGYIKNLSGGEKRRLYLVSILMTNPNFLILDEPTNDLDIRTLSVLEEF
LAEFDGCVLVVSHDRYFMDRTVDYLFTFQGEGIVEKFPGNYSEYLEYTNYLNKQKEKKESEIKPKEADSSKNKKGMSFQQ
KKELEVLESEISLLEKEERSLTDILQSGATKPEELANVGNRLTEIHSALSLKLDRWEELQNLM

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI10947135, Length=547, Percent_Identity=29.7989031078611, Blast_Score=183, Evalue=5e-46,
Organism=Homo sapiens, GI69354671, Length=547, Percent_Identity=29.7989031078611, Blast_Score=183, Evalue=5e-46,
Organism=Homo sapiens, GI148612853, Length=552, Percent_Identity=28.4420289855072, Blast_Score=183, Evalue=5e-46,
Organism=Homo sapiens, GI10947137, Length=527, Percent_Identity=28.842504743833, Blast_Score=182, Evalue=9e-46,
Organism=Homo sapiens, GI27881506, Length=527, Percent_Identity=28.842504743833, Blast_Score=182, Evalue=1e-45,
Organism=Homo sapiens, GI157502201, Length=319, Percent_Identity=25.3918495297806, Blast_Score=73, Evalue=9e-13,
Organism=Homo sapiens, GI157502203, Length=319, Percent_Identity=25.3918495297806, Blast_Score=73, Evalue=1e-12,
Organism=Homo sapiens, GI73747915, Length=203, Percent_Identity=26.6009852216749, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI45446740, Length=237, Percent_Identity=27.8481012658228, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI47078218, Length=237, Percent_Identity=27.8481012658228, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI27477115, Length=141, Percent_Identity=30.4964539007092, Blast_Score=69, Evalue=2e-11,
Organism=Escherichia coli, GI2367384, Length=516, Percent_Identity=37.4031007751938, Blast_Score=341, Evalue=9e-95,
Organism=Escherichia coli, GI1787182, Length=639, Percent_Identity=31.924882629108, Blast_Score=292, Evalue=4e-80,
Organism=Escherichia coli, GI1789751, Length=579, Percent_Identity=29.706390328152, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1787041, Length=533, Percent_Identity=29.2682926829268, Blast_Score=213, Evalue=3e-56,
Organism=Escherichia coli, GI1788165, Length=222, Percent_Identity=27.027027027027, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=28.169014084507, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081782, Length=273, Percent_Identity=26.007326007326, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789891, Length=224, Percent_Identity=27.6785714285714, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1786975, Length=226, Percent_Identity=27.4336283185841, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1789593, Length=199, Percent_Identity=29.1457286432161, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87081709, Length=198, Percent_Identity=28.7878787878788, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787164, Length=183, Percent_Identity=28.9617486338798, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1788761, Length=199, Percent_Identity=29.1457286432161, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790467, Length=168, Percent_Identity=32.7380952380952, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI48994883, Length=222, Percent_Identity=26.5765765765766, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=538, Percent_Identity=28.996282527881, Blast_Score=206, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17555318, Length=527, Percent_Identity=25.6166982922201, Blast_Score=159, Evalue=6e-39,
Organism=Caenorhabditis elegans, GI17553372, Length=552, Percent_Identity=28.2608695652174, Blast_Score=154, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17555800, Length=514, Percent_Identity=22.7626459143969, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17543740, Length=238, Percent_Identity=26.4705882352941, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI86563255, Length=149, Percent_Identity=32.8859060402685, Blast_Score=67, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=548, Percent_Identity=28.1021897810219, Blast_Score=176, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6321121, Length=553, Percent_Identity=28.0289330922242, Blast_Score=150, Evalue=8e-37,
Organism=Saccharomyces cerevisiae, GI6325030, Length=374, Percent_Identity=29.4117647058824, Blast_Score=127, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=382, Percent_Identity=25.130890052356, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6323278, Length=372, Percent_Identity=26.6129032258064, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24641342, Length=531, Percent_Identity=30.3201506591337, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24666836, Length=538, Percent_Identity=28.4386617100372, Blast_Score=180, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24642252, Length=545, Percent_Identity=25.8715596330275, Blast_Score=160, Evalue=2e-39,
Organism=Drosophila melanogaster, GI18859989, Length=545, Percent_Identity=25.8715596330275, Blast_Score=160, Evalue=2e-39,
Organism=Drosophila melanogaster, GI281363262, Length=228, Percent_Identity=28.0701754385965, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581191, Length=157, Percent_Identity=34.3949044585987, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581189, Length=157, Percent_Identity=34.3949044585987, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581193, Length=157, Percent_Identity=34.3949044585987, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581195, Length=157, Percent_Identity=34.3949044585987, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85816269, Length=161, Percent_Identity=34.7826086956522, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580553, Length=161, Percent_Identity=34.7826086956522, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85724864, Length=161, Percent_Identity=34.7826086956522, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580555, Length=161, Percent_Identity=34.7826086956522, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24653245, Length=228, Percent_Identity=28.0701754385965, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24662800, Length=296, Percent_Identity=22.972972972973, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 71015; Mature: 71015

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLISVDKISKEIGSKVLLNQISFGINEGEKIGILGINGSGKTTLLKMLAGIEVPDNGQI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHH
LRNKILKIAVLSQSPSFDSNHTILEHIFSGQSPILKTIRSYESICERLGSGDSEVEKEYN
HHHHHHEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RLMQEMDRLGAWELESWFRSILKELEILDLNVKMGSLSGGMLKKVVLVQTLIEESNLLVL
HHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
DEPTNHLDVETILWLQDYLVETKKAILLVTHDRYFLEEVTDRILELESGNLNSFPGNFGF
ECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
YLEKKAEAEVIREKTEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKSGKE
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCE
IVLDFSVSGKRLGKKILELKNVRKSYHKPIIYGFSYTFKNGERIGIVGPNGAGKSTLLDM
EEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHH
IVGREKPDSGDVSVGMNTNFGYFDQVSKELSGDMRVIEYIKKECGMSIKMNDDRVLSAAD
HHCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCHHHHHHH
MLELFLFDTRLQGGYIKNLSGGEKRRLYLVSILMTNPNFLILDEPTNDLDIRTLSVLEEF
HHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH
LAEFDGCVLVVSHDRYFMDRTVDYLFTFQGEGIVEKFPGNYSEYLEYTNYLNKQKEKKES
HHHCCCEEEEEECCCHHHHHHEEHEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EIKPKEADSSKNKKGMSFQQKKELEVLESEISLLEKEERSLTDILQSGATKPEELANVGN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RLTEIHSALSLKLDRWEELQNLM
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLISVDKISKEIGSKVLLNQISFGINEGEKIGILGINGSGKTTLLKMLAGIEVPDNGQI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHH
LRNKILKIAVLSQSPSFDSNHTILEHIFSGQSPILKTIRSYESICERLGSGDSEVEKEYN
HHHHHHEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RLMQEMDRLGAWELESWFRSILKELEILDLNVKMGSLSGGMLKKVVLVQTLIEESNLLVL
HHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
DEPTNHLDVETILWLQDYLVETKKAILLVTHDRYFLEEVTDRILELESGNLNSFPGNFGF
ECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
YLEKKAEAEVIREKTEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKSGKE
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCE
IVLDFSVSGKRLGKKILELKNVRKSYHKPIIYGFSYTFKNGERIGIVGPNGAGKSTLLDM
EEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHH
IVGREKPDSGDVSVGMNTNFGYFDQVSKELSGDMRVIEYIKKECGMSIKMNDDRVLSAAD
HHCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCHHHHHHH
MLELFLFDTRLQGGYIKNLSGGEKRRLYLVSILMTNPNFLILDEPTNDLDIRTLSVLEEF
HHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH
LAEFDGCVLVVSHDRYFMDRTVDYLFTFQGEGIVEKFPGNYSEYLEYTNYLNKQKEKKES
HHHCCCEEEEEECCCHHHHHHEEHEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EIKPKEADSSKNKKGMSFQQKKELEVLESEISLLEKEERSLTDILQSGATKPEELANVGN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RLTEIHSALSLKLDRWEELQNLM
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]