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The map label for this gene is dapA [H]

Identifier: 34498280

GI number: 34498280

Start: 3076860

End: 3077807

Strand: Reverse

Name: dapA [H]

Synonym: CV_2825

Alternate gene names: 34498280

Gene position: 3077807-3076860 (Counterclockwise)

Preceding gene: 34498281

Following gene: 34498279

Centisome position: 64.78

GC content: 68.57

Gene sequence:

>948_bases
ATGAGCGATAACATTTTCACCGGCTGCATCCCGGCCCTGATGACCCCGTGCACCGCCGATCGCCAGCCGGATTTCGACGC
GCTGGTGGCCAAGGGCAAGGAGCTGGTGTCCCTGGGCATGAGCGCGGTGGTGTACTGCGGCTCCATGGGAGACTGGCCGC
TGTTGAGCGAAGCCCAGCGCCAGGAGGGCGTGGCGCGGCTGGTGGCCGCCGGCGTGCCGACCATCGTGGGCACCGGCGCC
GTCAACAGCCGCGAGGCCGTTTCCCACGCCGCCCACGCCGCCAGCGTGGGGGCGCATGGCTTGATGGTGATTCCGCGCGT
GCTGTCGCGCGGCGCGTCCCCGGCCGCGCAAAAGGCGCATTTCTCCGCCATCCTGGCCGCCGCGCCCAAGCTGCCGGCGG
TGATCTACAACAGCCCCTATTACGGCTTCGCCACCCGCGCCGACCTGTTCTTCGAGCTGCGCCGCGCCTATCCCAACCTG
ATCGGCTTCAAGGAGTTTGGCGGCGCCGCCGACCTGCGCTACGCCGCCGAGCACATCACCTCCCAGGACGACGAGGTCAC
GCTGATGGTGGGCGTGGACACCCAGGTGGTGCATGGCTTCGTCAATTGCAACGCCACCGGCGCCATCACCGGCATCGGCA
ACGCGTTGCCGCGCGAGGTGCTGCACCTGGTGGCGCTGAGCCGGGCCGCGGCCAGGGGAGACGCCGTCGCCCGCCGCCGC
GCGCAGGAGCTGGAATCGGCGCTGGCCGTGCTGTCTTCCTTTGATGAGGGCTGCGACCTGGTGCTGTATTACAAGCACCT
GATGGTGCTGAACGGCGACAAGGAGTACGCGCTGCATTTCAACGAGAGCGACGCGTTGAGTCCCGCCCAGCGCCGCTATG
CCGAGACCCAGTACGCGCTGTTCCGCGAGTGGTACCGCAACTGGTCGGCCGAGCAGAACGTGGCCTGA

Upstream 100 bases:

>100_bases
ATGCTGCTGATAGACGAACAAGACCCTTTCGCGTGGGGCATCTGAGCCCGCGCCTCTCATGACCTCTACCACCTGAATGA
ATGCCGCAAGGAGCAAAACA

Downstream 100 bases:

>100_bases
CATTCCATCCCCGCCGCGCCCCGGGGGGCGCGGCAGTCTACTTGCAGCCGCCGGCAACACCTCGCAGAGCGCCTGAGCCC
AGGCGGGATCAGGGGCGTTG

Product: dihydroxydipicolinate synthase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSDNIFTGCIPALMTPCTADRQPDFDALVAKGKELVSLGMSAVVYCGSMGDWPLLSEAQRQEGVARLVAAGVPTIVGTGA
VNSREAVSHAAHAASVGAHGLMVIPRVLSRGASPAAQKAHFSAILAAAPKLPAVIYNSPYYGFATRADLFFELRRAYPNL
IGFKEFGGAADLRYAAEHITSQDDEVTLMVGVDTQVVHGFVNCNATGAITGIGNALPREVLHLVALSRAAARGDAVARRR
AQELESALAVLSSFDEGCDLVLYYKHLMVLNGDKEYALHFNESDALSPAQRRYAETQYALFREWYRNWSAEQNVA

Sequences:

>Translated_315_residues
MSDNIFTGCIPALMTPCTADRQPDFDALVAKGKELVSLGMSAVVYCGSMGDWPLLSEAQRQEGVARLVAAGVPTIVGTGA
VNSREAVSHAAHAASVGAHGLMVIPRVLSRGASPAAQKAHFSAILAAAPKLPAVIYNSPYYGFATRADLFFELRRAYPNL
IGFKEFGGAADLRYAAEHITSQDDEVTLMVGVDTQVVHGFVNCNATGAITGIGNALPREVLHLVALSRAAARGDAVARRR
AQELESALAVLSSFDEGCDLVLYYKHLMVLNGDKEYALHFNESDALSPAQRRYAETQYALFREWYRNWSAEQNVA
>Mature_314_residues
SDNIFTGCIPALMTPCTADRQPDFDALVAKGKELVSLGMSAVVYCGSMGDWPLLSEAQRQEGVARLVAAGVPTIVGTGAV
NSREAVSHAAHAASVGAHGLMVIPRVLSRGASPAAQKAHFSAILAAAPKLPAVIYNSPYYGFATRADLFFELRRAYPNLI
GFKEFGGAADLRYAAEHITSQDDEVTLMVGVDTQVVHGFVNCNATGAITGIGNALPREVLHLVALSRAAARGDAVARRRA
QELESALAVLSSFDEGCDLVLYYKHLMVLNGDKEYALHFNESDALSPAQRRYAETQYALFREWYRNWSAEQNVA

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI1786463, Length=230, Percent_Identity=29.1304347826087, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082415, Length=258, Percent_Identity=24.8062015503876, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 33863; Mature: 33732

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNIFTGCIPALMTPCTADRQPDFDALVAKGKELVSLGMSAVVYCGSMGDWPLLSEAQR
CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHEECCCCCCCCHHHHHH
QEGVARLVAAGVPTIVGTGAVNSREAVSHAAHAASVGAHGLMVIPRVLSRGASPAAQKAH
HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHH
FSAILAAAPKLPAVIYNSPYYGFATRADLFFELRRAYPNLIGFKEFGGAADLRYAAEHIT
HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCHHCCHHHCCCCHHHHHHHHHHC
SQDDEVTLMVGVDTQVVHGFVNCNATGAITGIGNALPREVLHLVALSRAAARGDAVARRR
CCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQELESALAVLSSFDEGCDLVLYYKHLMVLNGDKEYALHFNESDALSPAQRRYAETQYAL
HHHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
FREWYRNWSAEQNVA
HHHHHHCCCCCCCCC
>Mature Secondary Structure 
SDNIFTGCIPALMTPCTADRQPDFDALVAKGKELVSLGMSAVVYCGSMGDWPLLSEAQR
CCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHEECCCCCCCCHHHHHH
QEGVARLVAAGVPTIVGTGAVNSREAVSHAAHAASVGAHGLMVIPRVLSRGASPAAQKAH
HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHH
FSAILAAAPKLPAVIYNSPYYGFATRADLFFELRRAYPNLIGFKEFGGAADLRYAAEHIT
HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCHHCCHHHCCCCHHHHHHHHHHC
SQDDEVTLMVGVDTQVVHGFVNCNATGAITGIGNALPREVLHLVALSRAAARGDAVARRR
CCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQELESALAVLSSFDEGCDLVLYYKHLMVLNGDKEYALHFNESDALSPAQRRYAETQYAL
HHHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
FREWYRNWSAEQNVA
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA