Click here to switch to the map view.

The map label for this gene is ybbN

Identifier: 30061992

GI number: 30061992

Start: 453546

End: 454436

Strand: Reverse

Name: ybbN

Synonym: S0444

Alternate gene names: 30061992

Gene position: 454436-453546 (Counterclockwise)

Preceding gene: 30061993

Following gene: 30061989

Centisome position: 9.88

GC content: 55.56

Gene sequence:

>891_bases
ATGTCAAAGAAAATATCGACAACAGAGAGCGACTCCATGTCCGTAGAAAATATTGTCAACATTAACGAATCTAACCTGCA
ACAGGTTCTTGAACAGTCGATGACCACTCCGGTGCTGTTCTATTTTTGGTCTGAACGTAGCCAGCACTGTTTGCAGTTAA
CCCCGATCCTGGAAAGCCTCGCGGCGCAGTACAACGGGCAATTTATTCTGGCGAAGCTGGACTGCGACGCGGAGCAGATG
ATTGCCGCCCAGTTTGGTCTGCGCGCGATTCCGACCGTGTATCTGTTCCAGAACGGGCAACCGGTAGATGGCTTCCAGGG
GCCGCAACCGGAAGAGGCGATCCGCGCCCTGCTGGATAAAGTGCTGCCGCGCGAAGAAGAGCTGAAAGCGCAGCAGGCGA
TGCAACTGATGCAGGAAGGCAATTACACCGATGCCCTGCCATTGCTGAAAGACGCCTGGCAGTTGTCGAATCAGAACGGG
GAGATCGGCCTGCTGCTGGCAGAAACGCTGATTGCGCTGAACCGTTCTGAAGATGCGGAAGCGGTGCTGAAAACCATTCC
GTTGCAGGATCAGGACACCCGCTACCAGGGGCTGGTAGCGCAAATCGAACTGCTGAAGCAGGCGGCTGATAAGCCGGAAA
TTCAACAGTTGCAACAGCAGGTGGCGGAGAATCCAGAAGATGCCGCACTGGCGACGCAACTGGCGCTGCAACTGCATCAG
GTTGGGCGCAATGAAGAGGCGCTGGAGTTGCTGTTCGGGCATCTGCGTAAAGATCTCACCGCCGCAGACGGTCAGACGCG
TAAAACGTTCCAGGAGATCCTCGCTGCGCTGGGTACGGGTGATGCACTGGCGTCGAAGTATCGCCGCCAGCTGTATGCAT
TGTTGTATTGA

Upstream 100 bases:

>100_bases
GCTGGTGACCTGGGCAGTAATGGTGCTCGAGCGCCTGCTGCCTGGGCGCGTGATGGACAAAATATTGCAGGGGTGAGTTG
AAGCGCGCGCTTAAGCCCCC

Downstream 100 bases:

>100_bases
TATTCCGTTGTTCGGCACATGAACCACAACGCCGGATGCGATGCTGCGCATCCGGCATCGCATCATTTCTTCTTCAATTG
AGTCACCACCAACTGGTGGC

Product: putative thioredoxin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSKKISTTESDSMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQM
IAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNG
EIGLLLAETLIALNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADKPEIQQLQQQVAENPEDAALATQLALQLHQ
VGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY

Sequences:

>Translated_296_residues
MSKKISTTESDSMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQM
IAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNG
EIGLLLAETLIALNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADKPEIQQLQQQVAENPEDAALATQLALQLHQ
VGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY
>Mature_295_residues
SKKISTTESDSMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMI
AAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNGE
IGLLLAETLIALNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADKPEIQQLQQQVAENPEDAALATQLALQLHQV
GRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI87081747, Length=284, Percent_Identity=99.2957746478873, Blast_Score=567, Evalue=1e-163,
Organism=Escherichia coli, GI1788936, Length=105, Percent_Identity=30.4761904761905, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 33084; Mature: 32953

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKISTTESDSMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESL
CCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH
AAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDK
HHHHCCCEEEEEECCCHHHHHHHHHCHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
VLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNGEIGLLLAETLIALNRSEDAE
HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCHHH
AVLKTIPLQDQDTRYQGLVAQIELLKQAADKPEIQQLQQQVAENPEDAALATQLALQLHQ
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKKISTTESDSMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESL
CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH
AAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDK
HHHHCCCEEEEEECCCHHHHHHHHHCHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
VLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNGEIGLLLAETLIALNRSEDAE
HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCHHH
AVLKTIPLQDQDTRYQGLVAQIELLKQAADKPEIQQLQQQVAENPEDAALATQLALQLHQ
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYRRQLYALLY
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]