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The map label for this gene is ybbK

Identifier: 30061989

GI number: 30061989

Start: 450977

End: 451894

Strand: Reverse

Name: ybbK

Synonym: S0441

Alternate gene names: 30061989

Gene position: 451894-450977 (Counterclockwise)

Preceding gene: 30061992

Following gene: 30061988

Centisome position: 9.83

GC content: 52.4

Gene sequence:

>918_bases
ATGCTTATCTTTATCCCGATTCTCATTTTTGTCGCGCTGGTCATTGTCGGCGCGGGCGTCAAAATCGTGCCGCAGGGCTA
TCAATGGACGGTAGAACGTTTTGGTCGCTATACCAAAACGTTACAGCCGGGGCTCAGTCTGGTGGTGCCGTTTATGGATC
GCATTGGTCGCAAGATCAATATGATGGAGCAAGTGCTCGATATCCCTTCCCAGGAAGTTATCTCGAAAGATAACGCCAAC
GTTACCATCGACGCAGTCTGTTTTATTCAGGTGATTGACGCGCCACGCGCTGCCTATGAAGTCAGCAATCTGGAGCTGGC
GATCATCAACCTGACCATGACTAACATCCGTACCGTGTTGGGTTCAATGGAACTTGACGAAATGCTCTCTCAGCGCGACA
GCATCAACTCACGCCTGCTGCGTATTGTCGATGAAGCCACCAACCCGTGGGGGATTAAAGTCACCCGTATTGAAATTCGC
GACGTGCGCCCACCGGCAGAGCTTATCTCTTCAATGAACGCGCAGATGAAAGCGGAACGTACCAAACGCGCTTACATTCT
TGAAGCGGAAGGGATCCGTCAGGCGGAAATCCTCAAAGCCGAAGGTGAAAAACAGTCGCAAATCCTGAAAGCGGAAGGCG
AACGTCAGTCGGCGTTTTTACAGGCTGAAGCGCGTGAACGTTCCGCCGAAGCAGAAGCCCGCGCCACCAAAATGGTGTCT
GAAGCTATCGCCTCCGGTGATATTCAGGCGGTGAACTACTTCGTAGCGCAAAAATACACCGAAGCGTTACAGCAGATCGG
TTCCTCCAGTAACAGCAAAGTAGTGATGATGCCATTAGAGGCCAGCAGCCTGATGGGGTCGATTGCCGGGATTGCCGAGC
TGGTGAAAGACAGCGCCAACAAACGGACTCAGCCATGA

Upstream 100 bases:

>100_bases
GCAGGAATAAGGGGGAACTCTCTTTCAGTAATCAGGTATAATTTGTTTAATCAAGCAGCAATTTTGCTGATTATGGACGG
TACAACAGGAGGTTTTTCCG

Downstream 100 bases:

>100_bases
TGGAGTTAATGGTCGTTCATCCACATATTTTCTGGCTCAGTCTCGGCGGGTTGCTGCTGGCAGCCGAGATGCTGGGCGGA
AATGGTTATTTGTTGTGGAG

Product: putative protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNAN
VTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR
DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATKMVS
EAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKDSANKRTQP

Sequences:

>Translated_305_residues
MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNAN
VTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR
DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATKMVS
EAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKDSANKRTQP
>Mature_305_residues
MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNAN
VTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR
DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATKMVS
EAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKDSANKRTQP

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family

Homologues:

Organism=Homo sapiens, GI7305503, Length=264, Percent_Identity=34.8484848484849, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI21686995, Length=193, Percent_Identity=34.7150259067358, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI221316744, Length=193, Percent_Identity=34.7150259067358, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI38016911, Length=192, Percent_Identity=33.8541666666667, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI7657615, Length=138, Percent_Identity=34.7826086956522, Blast_Score=86, Evalue=5e-17,
Organism=Escherichia coli, GI1786697, Length=305, Percent_Identity=100, Blast_Score=615, Evalue=1e-177,
Organism=Escherichia coli, GI1790616, Length=272, Percent_Identity=22.0588235294118, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI32564147, Length=298, Percent_Identity=35.5704697986577, Blast_Score=175, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17569493, Length=217, Percent_Identity=35.4838709677419, Blast_Score=121, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI193209764, Length=217, Percent_Identity=35.4838709677419, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI71989948, Length=155, Percent_Identity=36.7741935483871, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71989955, Length=155, Percent_Identity=36.7741935483871, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71987612, Length=198, Percent_Identity=34.3434343434343, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25153583, Length=192, Percent_Identity=34.8958333333333, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71987621, Length=218, Percent_Identity=33.4862385321101, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17569497, Length=193, Percent_Identity=30.0518134715026, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17569499, Length=193, Percent_Identity=34.1968911917098, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17570459, Length=205, Percent_Identity=35.609756097561, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI32566490, Length=188, Percent_Identity=33.5106382978723, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI193210507, Length=195, Percent_Identity=34.3589743589744, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17570161, Length=195, Percent_Identity=34.3589743589744, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71989963, Length=120, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI45550506, Length=275, Percent_Identity=36, Blast_Score=182, Evalue=3e-46,
Organism=Drosophila melanogaster, GI45556022, Length=193, Percent_Identity=34.7150259067358, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI18860517, Length=199, Percent_Identity=31.6582914572864, Blast_Score=101, Evalue=8e-22,
Organism=Drosophila melanogaster, GI24657857, Length=199, Percent_Identity=35.1758793969849, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI62484448, Length=199, Percent_Identity=35.1758793969849, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI281365664, Length=197, Percent_Identity=32.994923857868, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI62484274, Length=199, Percent_Identity=35.1758793969849, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI21356845, Length=191, Percent_Identity=26.7015706806283, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281361631, Length=194, Percent_Identity=26.8041237113402, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI281361633, Length=194, Percent_Identity=26.8041237113402, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28573263, Length=198, Percent_Identity=25.2525252525253, Blast_Score=82, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): QMCA_ECO57 (P0AA55)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   B85548
- PIR:   H90697
- RefSeq:   NP_286238.1
- RefSeq:   NP_308579.1
- ProteinModelPortal:   P0AA55
- SMR:   P0AA55
- EnsemblBacteria:   EBESCT00000026032
- EnsemblBacteria:   EBESCT00000060125
- GeneID:   915340
- GeneID:   957477
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0642
- KEGG:   ecs:ECs0552
- GeneTree:   EBGT00050000010264
- HOGENOM:   HBG714701
- OMA:   LEASNLM
- ProtClustDB:   CLSK862110
- BioCyc:   ECOL83334:ECS0552-MONOMER
- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972
- PANTHER:   PTHR10264
- PRINTS:   PR00721
- SMART:   SM00244

Pfam domain/function: PF01145 Band_7

EC number: NA

Molecular weight: Translated: 33744; Mature: 33744

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x10933dac)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKIN
CEEHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHH
MMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVL
HHHHHHCCCCHHHHCCCCCCEEEEHEEEEHHHCCCHHHEEECCCEEEEEEEEHHHHHHHH
GSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAER
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHCHHHHHHH
TKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATKMVS
HHHEEEEECCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKDSAN
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
KRTQP
CCCCH
>Mature Secondary Structure
MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKIN
CEEHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHH
MMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVL
HHHHHHCCCCHHHHCCCCCCEEEEHEEEEHHHCCCHHHEEECCCEEEEEEEEHHHHHHHH
GSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAER
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHCHHHHHHH
TKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATKMVS
HHHEEEEECCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKDSAN
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
KRTQP
CCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796