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The map label for this gene is safC

Identifier: 30061771

GI number: 30061771

Start: 230785

End: 232668

Strand: Reverse

Name: safC

Synonym: S0214

Alternate gene names: NA

Gene position: 232668-230785 (Counterclockwise)

Preceding gene: 30061772

Following gene: 30061770

Centisome position: 5.06

GC content: 59.13

Gene sequence:

>1884_bases
ATGGATCCACGGCTACTGGAATACTACAACCGCGAACTGAGCTATCTGCGGGAAACGGGAGCCGAATTTGCCGCCCGTCA
TCCCAAAGTCGCCGCCCGGCTGGGCATGCAGGGAACGGATATTGCCGATCCGTATGTAGAGCGAATGGTCGAGGCCTTCA
GCTTCCTGACCGCCCGCACGCAGCTAAAAATTGACGCTGAATTCCCCCGTTTCACCCAGCGCCTGCTGGAAGTGGTCAGC
CCCAATTACGTCACACCCACGCCCTCAATGAGCGTGGCGCAGTTGCATCCCGATACGGAAGAAGGCGATCTGGCGAAAGG
ATTTACCGTCCCGCGCGACACAGCCTTTTTCTCCGCCATTCCGGAAGGCGAAAGCACTGCCTGCCAGTTTCGCAGCAGCC
AGGATGTAACGCTGTGGCCGCTCGCCATCGAAGAGGCGCGACTGACCGCCGCGCCACCGGATATGCCTGCCCTGCACCGC
TACCTGCCGGCCAACATTCACGTCGCCGGGGCGCTGCGTATTACCCTGCGCACCTTTGGTGAACTAACGTTCAGTCAGCT
TGCCGGACTGGACAGGCTGCCGTTTTATCTCTGCGGCGAGGAGCGTACGGCCTCACACCTGTTAGAACTTCTACATACCA
GCGCCATCGCGCCCCTGGCTGGCATTCCGGGGCATTTTGACGGCGCGCTGGATGTGAATCTGCAACAGCCCGTTATGTAC
GAAGGCCTGGAGCCGGATCAGGGGCTGCTGCCGCTGGCGTGGAACGTGTTTCACGGTCATAACCTGCTGCATGAATATTT
TGCCTGTCCGGAACGCTTCTATTTTTTCACCCCGACAGGCCTGTCTGCCGGATTACAGAAAATTGACGGTGGCGTGGCGG
AGATTGTTATCCTGCTGAACCGCCTGCCGCCGGACTGGCTGATCCACCAGACAAATGCGGCACAGTTCAGCCTGTTCTGT
ACCCCGGTTATCAACCTGTTTCCCCGCGTCACCGCCCGGATCGATGTCACGCACAGCACGACGGAACAGCATCTGGTGGT
GGACAGAACCCATCCGCTGGATTATGAGGTGTTCTCGGTCCAGGAAGTGGAAGGGCTGGAAACCGACACCACACGGAAGA
TGGCCTTTCGCCCGCTCTACCACACCCGCAATAATGATGAAGGCAATCACGGACGTTATTTTTCCCTGCGCCGGGAGCCC
CGCCGCTTATCAGAAAACGCCCGCCGTTACGGCACCCGTACCCCCTATACGGGCTCGGAAGTGTTCCTGTCGCTGGTTGA
CCAGTATGAAGCGCCGTACCCGGAAAATCTGCGCCACATCACCATCACGGCCATGGTCACTAACCGCGATCTGCCCTGTC
TTATTGCCCGCAATGGCCGGGACGATCTAACCGTGGATGCAGCCATCCCGGTGGCGGGCGTAGGGCTTATCCGCCCGCCA
CGCTCGCCGCAGCCCCCGATGGCTGAACGTGAGATGGCATGGCGGTTGATCCGCCAGTTATCTTTTAATTATCTGCCGCT
GGCCGATCTGGATCACCGTACCGGCGGCCAGGCGTTGCGAGATCTGCTGAACCTGTTTATTCCTGCTCATGACAGTCCGC
AATCGCGCCAGGTGCGCAGCCTGATTGGTTGTAAAACGACCCCGGTCACCCGCCGTCTGCCCGGTTCCGGACTACTGGTC
TATGGGCGTGGCGTCAGTTGTGAACTGACGGTGGATGAAGAAGGTTTTTCCGGCATCAGTCCGTATCTGTTCGGCCTGGT
GCTGGAACACTATATCGCCCGCCATGTTTCCATTAATACCTTCTCGCAGATGACGCTGCACAGCATGCAGCGCGGCAAAA
TTATGACCTGGCCTGTCAGGGCGGGACAGCGGGGAAGCGTATGA

Upstream 100 bases:

>100_bases
CGAGATCCTCACGCAGCCGTATCCGACTGCATTCCGGGTACGTAGCGCGCTGGATATGGAGCAGAGTCGCATTACGTTTT
TTTAATTCAGAGAGAGACCG

Downstream 100 bases:

>100_bases
GCAACGATTTCACTCAGGCGCAGGCCCCCCCCTGGCGTTACGGTTTTCTGAACCTGATGCGCCGCGTGGATGTGCAGTTG
TGTACCGTTCCGGCGGGCAA

Product: outer membrane usher protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; T6ss C; Type VI Secretion System; Type VI Secretion System Core Protein; Protein ImpG; Cytoplasmic Protein SciC; Type VI Secretion System Protein ImpG; Conserved Protein; Type VI Secretion System Protein EvpF; Type VI Secretion System Protein; Type VI Secretion Protein VasA; Protein ImpG/VasA; Type VI Secretion

Number of amino acids: Translated: 627; Mature: 627

Protein sequence:

>627_residues
MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADPYVERMVEAFSFLTARTQLKIDAEFPRFTQRLLEVVS
PNYVTPTPSMSVAQLHPDTEEGDLAKGFTVPRDTAFFSAIPEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHR
YLPANIHVAGALRITLRTFGELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAPLAGIPGHFDGALDVNLQQPVMY
EGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFFTPTGLSAGLQKIDGGVAEIVILLNRLPPDWLIHQTNAAQFSLFC
TPVINLFPRVTARIDVTHSTTEQHLVVDRTHPLDYEVFSVQEVEGLETDTTRKMAFRPLYHTRNNDEGNHGRYFSLRREP
RRLSENARRYGTRTPYTGSEVFLSLVDQYEAPYPENLRHITITAMVTNRDLPCLIARNGRDDLTVDAAIPVAGVGLIRPP
RSPQPPMAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLV
YGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGKIMTWPVRAGQRGSV

Sequences:

>Translated_627_residues
MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADPYVERMVEAFSFLTARTQLKIDAEFPRFTQRLLEVVS
PNYVTPTPSMSVAQLHPDTEEGDLAKGFTVPRDTAFFSAIPEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHR
YLPANIHVAGALRITLRTFGELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAPLAGIPGHFDGALDVNLQQPVMY
EGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFFTPTGLSAGLQKIDGGVAEIVILLNRLPPDWLIHQTNAAQFSLFC
TPVINLFPRVTARIDVTHSTTEQHLVVDRTHPLDYEVFSVQEVEGLETDTTRKMAFRPLYHTRNNDEGNHGRYFSLRREP
RRLSENARRYGTRTPYTGSEVFLSLVDQYEAPYPENLRHITITAMVTNRDLPCLIARNGRDDLTVDAAIPVAGVGLIRPP
RSPQPPMAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLV
YGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGKIMTWPVRAGQRGSV
>Mature_627_residues
MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADPYVERMVEAFSFLTARTQLKIDAEFPRFTQRLLEVVS
PNYVTPTPSMSVAQLHPDTEEGDLAKGFTVPRDTAFFSAIPEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHR
YLPANIHVAGALRITLRTFGELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAPLAGIPGHFDGALDVNLQQPVMY
EGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFFTPTGLSAGLQKIDGGVAEIVILLNRLPPDWLIHQTNAAQFSLFC
TPVINLFPRVTARIDVTHSTTEQHLVVDRTHPLDYEVFSVQEVEGLETDTTRKMAFRPLYHTRNNDEGNHGRYFSLRREP
RRLSENARRYGTRTPYTGSEVFLSLVDQYEAPYPENLRHITITAMVTNRDLPCLIARNGRDDLTVDAAIPVAGVGLIRPP
RSPQPPMAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLV
YGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGKIMTWPVRAGQRGSV

Specific function: Unknown

COG id: COG3519

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70450; Mature: 70450

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADPYVERMVEAFSFLTART
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHE
QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMSVAQLHPDTEEGDLAKGFTVPRDTAFFSAI
EEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCC
PEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHRYLPANIHVAGALRITLRTFG
CCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEEHHHH
ELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAPLAGIPGHFDGALDVNLQQPVMY
HHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHH
EGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFFTPTGLSAGLQKIDGGVAEIVILLN
CCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCHHHHHHHHHH
RLPPDWLIHQTNAAQFSLFCTPVINLFPRVTARIDVTHSTTEQHLVVDRTHPLDYEVFSV
CCCCCCEEECCCCCEEEEEHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCCCCEEEEEE
QEVEGLETDTTRKMAFRPLYHTRNNDEGNHGRYFSLRREPRRLSENARRYGTRTPYTGSE
HHHCCCCCCCHHHHHHCCHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHH
VFLSLVDQYEAPYPENLRHITITAMVTNRDLPCLIARNGRDDLTVDAAIPVAGVGLIRPP
HHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCEECCC
RSPQPPMAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
HHCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCH
FSQMTLHSMQRGKIMTWPVRAGQRGSV
HHHHHHHHHHCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADPYVERMVEAFSFLTART
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHE
QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMSVAQLHPDTEEGDLAKGFTVPRDTAFFSAI
EEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCC
PEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHRYLPANIHVAGALRITLRTFG
CCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEEHHHH
ELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAPLAGIPGHFDGALDVNLQQPVMY
HHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHH
EGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFFTPTGLSAGLQKIDGGVAEIVILLN
CCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCHHHHHHHHHH
RLPPDWLIHQTNAAQFSLFCTPVINLFPRVTARIDVTHSTTEQHLVVDRTHPLDYEVFSV
CCCCCCEEECCCCCEEEEEHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCCCCEEEEEE
QEVEGLETDTTRKMAFRPLYHTRNNDEGNHGRYFSLRREPRRLSENARRYGTRTPYTGSE
HHHCCCCCCCHHHHHHCCHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHH
VFLSLVDQYEAPYPENLRHITITAMVTNRDLPCLIARNGRDDLTVDAAIPVAGVGLIRPP
HHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCEECCC
RSPQPPMAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
HHCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCH
FSQMTLHSMQRGKIMTWPVRAGQRGSV
HHHHHHHHHHCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA