Click here to switch to the map view.

The map label for this gene is safB

Identifier: 30061770

GI number: 30061770

Start: 230483

End: 230788

Strand: Reverse

Name: safB

Synonym: S0213

Alternate gene names: NA

Gene position: 230788-230483 (Counterclockwise)

Preceding gene: 30061771

Following gene: 30061769

Centisome position: 5.02

GC content: 61.76

Gene sequence:

>306_bases
ATGAGCAACGATTTCACTCAGGCGCAGGCCCCCCCCTGGCGTTACGGTTTTCTGAACCTGATGCGCCGCGTGGATGTGCA
GTTGTGTACCGTTCCGGCGGGCAACACCTGGCAACCACGGATGGAAAAATTTCGCCTCGGACAAACGCCCGCGCTGACCT
TTGCGCCACGAGAAATCGCCAGTGTGGGCTGGCAGGAAGGGCGCCTGCACATCAGTCTGTACAGCCTCGTGCTGTGGGGG
CCGAACGGTCCACTGCCGCTGCACTACACCGAACTGGCGCGTAACCGGACTGAAAGCCGACGCTGA

Upstream 100 bases:

>100_bases
GCCATGTTTCCATTAATACCTTCTCGCAGATGACGCTGCACAGCATGCAGCGCGGCAAAATTATGACCTGGCCTGTCAGG
GCGGGACAGCGGGGAAGCGT

Downstream 100 bases:

>100_bases
CCCGTTTTTCTGATCTTTTTCATCACCGCTGGCTGACGCAGTTTTACCAGGCATGGCGCAGCGCCCAGTCCGCTGGGGGC
GGTCTGGATAAACCGCAACA

Product: periplasmic chaperone of fimbral assembly machinery

Products: NA

Alternate protein names: Cytoplasmic Protein; T6ss R; Type VI Secretion System Core Protein; Replication/Virulence Associated Protein; Conserved Protein; Periplasmic Chaperone Of Fimbral Assembly Machinery; Cytoplasmic Protein SciB; Type VI Secretion System Protein ImpH

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MSNDFTQAQAPPWRYGFLNLMRRVDVQLCTVPAGNTWQPRMEKFRLGQTPALTFAPREIASVGWQEGRLHISLYSLVLWG
PNGPLPLHYTELARNRTESRR

Sequences:

>Translated_101_residues
MSNDFTQAQAPPWRYGFLNLMRRVDVQLCTVPAGNTWQPRMEKFRLGQTPALTFAPREIASVGWQEGRLHISLYSLVLWG
PNGPLPLHYTELARNRTESRR
>Mature_100_residues
SNDFTQAQAPPWRYGFLNLMRRVDVQLCTVPAGNTWQPRMEKFRLGQTPALTFAPREIASVGWQEGRLHISLYSLVLWGP
NGPLPLHYTELARNRTESRR

Specific function: Unknown

COG id: COG3520

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11668; Mature: 11536

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNDFTQAQAPPWRYGFLNLMRRVDVQLCTVPAGNTWQPRMEKFRLGQTPALTFAPREIA
CCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHCCCCCCCEEECCHHHH
SVGWQEGRLHISLYSLVLWGPNGPLPLHYTELARNRTESRR
HCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SNDFTQAQAPPWRYGFLNLMRRVDVQLCTVPAGNTWQPRMEKFRLGQTPALTFAPREIA
CCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHCCCCCCCEEECCHHHH
SVGWQEGRLHISLYSLVLWGPNGPLPLHYTELARNRTESRR
HCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA