| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349704
Identifier: 29349704
GI number: 29349704
Start: 5659561
End: 5660598
Strand: Reverse
Name: 29349704
Synonym: BT_4296
Alternate gene names: NA
Gene position: 5660598-5659561 (Counterclockwise)
Preceding gene: 29349705
Following gene: 29349703
Centisome position: 90.42
GC content: 41.23
Gene sequence:
>1038_bases ATGAATAACAGACTGAATATGAAAAAGAAATTTAATATAATGCTCTGCACCCTTATAGGTGTATTGAGTGCTTGCAATGA ATACGATTTCGACCAGGAACAATACCGGAACGAAGTAGGCTTACTCAGTAATTCGAGTCTGATCTACGACCGGCAGGTGG CTAATGTAGGACAAGAAAAAGATACGATCTATCTGGTTGCCACGGTTAGCGGCTCACAAATAAGCCCTAACACACACCAT GTAGCTCTTCTGGAATCGGACTCTTTGCTGAAAGCATACAACAAATCCAACTTTGATATAGAAAAAGAAAAATTTGCCAA ACTGCTTCCCGATGAATGCTATGATTTTCCCAATAAGGAACTGGATATTCAGGCAGGCACTTCCAAAGTAATGTTTCCGA TCTATCTGAAAAATCTGGAAAGGATTTCACCGGATTCCATTTATTTTCTGGATTACAAGATAGATCCGGAAAAAACACCT AATTATAATCCGGATAAAAGTCATGTATTATTGCGTATCTATAAAGAAAACTATTACGCAACGACAAAGACTTCTACCTA CTACAATTATACAAGCAGTACGATTGTAATTCCTAACCCCAGTGGTAGTCCCGAAGTCCGTAGACCGACAAATGCCAATC AAGTATTCCCGATCGGTGCCAATTCGGTACGCATGATGGCAGGTGATGAAGATCTTGGCGATTATAAGACAGCAAGAAGC AGAATTGTATCTAAGAGTATCATTCTGGAAATTGGCGAGCAGCAACCGGAGAATCCTCAGGCCAGAGAACTTACCATCAG AGCGCATGACAGAGTTAATGATGTGGAAGTGGATCCGGTCGATGTAGTACAACTTACTCCAATCGATGATTACGACAACA CATTCCTGTTAAACGCTATCCGTACTCCCGACGGACGTGCCACTTATTACAAAGAGTTCCGTCTGCATTATAAATATCGC CTGGAATCCACCGCCCCTTACCGGGAAGTGAAAGCCAAACTACGATATGAATTTAACCCAAGAGTAGATAACTTGTAA
Upstream 100 bases:
>100_bases TGCACTGCCTAAAATGGTATTCTTACCGATCCGCCATGATGAATTGCTGAAGGTTCCCAATGCCGACCAGAATTTCGGAT GGGACAGATAATATCAAAAC
Downstream 100 bases:
>100_bases TCAAATCAAATGAGTATGAAAAAAAATATATTAATCATCGGGCTCGCAAGCATATTCGGAATTGCTTCCGGACTTATCTC TTGTTCGCCCGATTACGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MNNRLNMKKKFNIMLCTLIGVLSACNEYDFDQEQYRNEVGLLSNSSLIYDRQVANVGQEKDTIYLVATVSGSQISPNTHH VALLESDSLLKAYNKSNFDIEKEKFAKLLPDECYDFPNKELDIQAGTSKVMFPIYLKNLERISPDSIYFLDYKIDPEKTP NYNPDKSHVLLRIYKENYYATTKTSTYYNYTSSTIVIPNPSGSPEVRRPTNANQVFPIGANSVRMMAGDEDLGDYKTARS RIVSKSIILEIGEQQPENPQARELTIRAHDRVNDVEVDPVDVVQLTPIDDYDNTFLLNAIRTPDGRATYYKEFRLHYKYR LESTAPYREVKAKLRYEFNPRVDNL
Sequences:
>Translated_345_residues MNNRLNMKKKFNIMLCTLIGVLSACNEYDFDQEQYRNEVGLLSNSSLIYDRQVANVGQEKDTIYLVATVSGSQISPNTHH VALLESDSLLKAYNKSNFDIEKEKFAKLLPDECYDFPNKELDIQAGTSKVMFPIYLKNLERISPDSIYFLDYKIDPEKTP NYNPDKSHVLLRIYKENYYATTKTSTYYNYTSSTIVIPNPSGSPEVRRPTNANQVFPIGANSVRMMAGDEDLGDYKTARS RIVSKSIILEIGEQQPENPQARELTIRAHDRVNDVEVDPVDVVQLTPIDDYDNTFLLNAIRTPDGRATYYKEFRLHYKYR LESTAPYREVKAKLRYEFNPRVDNL >Mature_345_residues MNNRLNMKKKFNIMLCTLIGVLSACNEYDFDQEQYRNEVGLLSNSSLIYDRQVANVGQEKDTIYLVATVSGSQISPNTHH VALLESDSLLKAYNKSNFDIEKEKFAKLLPDECYDFPNKELDIQAGTSKVMFPIYLKNLERISPDSIYFLDYKIDPEKTP NYNPDKSHVLLRIYKENYYATTKTSTYYNYTSSTIVIPNPSGSPEVRRPTNANQVFPIGANSVRMMAGDEDLGDYKTARS RIVSKSIILEIGEQQPENPQARELTIRAHDRVNDVEVDPVDVVQLTPIDDYDNTFLLNAIRTPDGRATYYKEFRLHYKYR LESTAPYREVKAKLRYEFNPRVDNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39771; Mature: 39771
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNRLNMKKKFNIMLCTLIGVLSACNEYDFDQEQYRNEVGLLSNSSLIYDRQVANVGQEK CCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHCEEECCCEEEEHHHHHCCCCC DTIYLVATVSGSQISPNTHHVALLESDSLLKAYNKSNFDIEKEKFAKLLPDECYDFPNKE CEEEEEEEECCCEECCCCEEEEEEECCCHHHHHCCCCCCCCHHHHHHHCCHHHHCCCCCE LDIQAGTSKVMFPIYLKNLERISPDSIYFLDYKIDPEKTPNYNPDKSHVLLRIYKENYYA EEEECCCCEEEEHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCEEE TTKTSTYYNYTSSTIVIPNPSGSPEVRRPTNANQVFPIGANSVRMMAGDEDLGDYKTARS EEECCEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHH RIVSKSIILEIGEQQPENPQARELTIRAHDRVNDVEVDPVDVVQLTPIDDYDNTFLLNAI HHHHHHHEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEEE RTPDGRATYYKEFRLHYKYRLESTAPYREVKAKLRYEFNPRVDNL ECCCCCEEEEEEEEEEEEEEECCCCCHHHHHEEEEEEECCCCCCC >Mature Secondary Structure MNNRLNMKKKFNIMLCTLIGVLSACNEYDFDQEQYRNEVGLLSNSSLIYDRQVANVGQEK CCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHCEEECCCEEEEHHHHHCCCCC DTIYLVATVSGSQISPNTHHVALLESDSLLKAYNKSNFDIEKEKFAKLLPDECYDFPNKE CEEEEEEEECCCEECCCCEEEEEEECCCHHHHHCCCCCCCCHHHHHHHCCHHHHCCCCCE LDIQAGTSKVMFPIYLKNLERISPDSIYFLDYKIDPEKTPNYNPDKSHVLLRIYKENYYA EEEECCCCEEEEHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCEEE TTKTSTYYNYTSSTIVIPNPSGSPEVRRPTNANQVFPIGANSVRMMAGDEDLGDYKTARS EEECCEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHH RIVSKSIILEIGEQQPENPQARELTIRAHDRVNDVEVDPVDVVQLTPIDDYDNTFLLNAI HHHHHHHEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEEE RTPDGRATYYKEFRLHYKYRLESTAPYREVKAKLRYEFNPRVDNL ECCCCCEEEEEEEEEEEEEEECCCCCHHHHHEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA