| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349703
Identifier: 29349703
GI number: 29349703
Start: 5657707
End: 5659551
Strand: Reverse
Name: 29349703
Synonym: BT_4295
Alternate gene names: NA
Gene position: 5659551-5657707 (Counterclockwise)
Preceding gene: 29349704
Following gene: 29349702
Centisome position: 90.4
GC content: 42.33
Gene sequence:
>1845_bases ATGAGTATGAAAAAAAATATATTAATCATCGGGCTCGCAAGCATATTCGGAATTGCTTCCGGACTTATCTCTTGTTCGCC CGATTACGAAACCGAGTTTAAAGTAGAAACGCTCGTAGTTCCTGATAAAAGTCAGGCACCTATCACTTTCCCACTTCTGG GAGGAGAACATGAAATTGAAGTGCAGACCAATGTACCACTCGACAGATGGAGTGCCCAGTCCAATGCAGAATGGTGCAAG GTAGTACAACACGAGGGCAAAGTAGTCGTATCTGCCAGTGCAAACAATATATACAAACAACGCCGGGCAGAAATCACTGT AGCCTATGGTCATCAAAGCTATTCCATCACTGTCTCGCAGTTTGGTAAAGAACCGGCCATCCTTATAGGTGACAAGCTAC AACAGGAAGGATATGTAGAAATAATAGATGCAGAAAGAGAAACATTGACAATTCCTGTAGCGACCAACCTGAATCTGGAT AATATCATTATACCAGACACTTGCAACTGGATACGTCTGGCAGAGCAACCTGCCACATTTGATGCAAAGACGCGTGCAGC GGAAGACGTAAACAAACAGGAACTGAAATTTACGCTGGATAAAAGCACCGAGACTGACGTACGTTATTGTACGATTATCC TCCAGTCTTCCCAGAATTACAGCTATACAGCTTCTTTCCTGATAAAGCAACAACCCAGAGGTTATATAGTCGAAATCGAT GAAGACAAGAAGATCTATGAAGTGAAAGCAATGGGAGAAACAATCACTATTCCTTTCAAAGTAAATTCTCCTGCCGGTGA AGTGTCATATACCTATGAAGTCGAAGAATCCGCCCAATCCTGGATCACTCCAGTATCATTACCCGCTTCAAGAGCACTGC GTGATGTCTCCGAAAGCTTTATCATTAAAGCCAACACTGAAGTTGAGAATCAACCTCGTGAAGGAAAGATAACCTTCAAG AGTACCAATAGCACCGACAAAGTACCAAGTCAGTTCGTAGTCACAGTAAAACAGGCCGGATTTATCGCGACACCTCCTTT AAATGTGATCAATGCTACTGCTACTCCGGGAGCCGGAAGTATTCAGCTGCAATGGGAGATACCTGAAGATGTAGACTTCA ACAAGATAAAGATTACCTATTACGATAAAGTCACGAAAGAAAATAAAGAGATCTTAATAAATGACTATAAGACAACATCC TATATCATAGATGATACTTACCAATGTGCAGGTGAATACTCATTTACTATCAACACCTATGGTCCGACTGGTATGGAGAC AGATAGTCCGGTAACAATAACAGGCATTTCCGGCGAAGCTTCCGAAATGGAACGTGTTACTCTTACTATCGATATGCTTT CCGACAATGCTAATCATGTCGGAGACGGAGGCGGTTTACCGGCATTGATTGACGGGAAGGTGAATACTTATTATCATACC AAGTGGAATGCTCCTGTTACAACAGAAGCACATTATGTCCAGATCAAACTGAACAAACCATTAAAGGACCTTTGTTTTGA ATATGATGCACGTCAAAGCGGAGTGAATAACGGAGGTGACGTAAAAGCCGCAACAATATATGGAAGTATGAACGGTGAGT TCTTTGAAAGTATGGGTAATGAAGAATTCAATCTGCCGACAACAAACGGTGGCCATGCCACAGCTAAAAACAATGTGAGT GGAAAGCAAGCTTACAACTATATCCGATTTACTCCTACGGCTCGCCGTGACAAAGATCCATTGGATTATACTGTCGCAGG CAGTGCATGGTGGAATATGTCCGAAATATACCTTTACAGAATAAGACATGATGAAGCCTGGGCAAGAGAACAGCTAGGCA TTTAA
Upstream 100 bases:
>100_bases TTATAAATATCGCCTGGAATCCACCGCCCCTTACCGGGAAGTGAAAGCCAAACTACGATATGAATTTAACCCAAGAGTAG ATAACTTGTAATCAAATCAA
Downstream 100 bases:
>100_bases GTAAAACAAGAAAAGACTGACGAAGAACAAAATAAGATCAGATTAGACACATTTTCTTATCGAGTTCTTCGCCAGTCTTA CTTTTTTATAAAATTGGATG
Product: putative chitobiase
Products: NA
Alternate protein names: Lipoprotein
Number of amino acids: Translated: 614; Mature: 613
Protein sequence:
>614_residues MSMKKNILIIGLASIFGIASGLISCSPDYETEFKVETLVVPDKSQAPITFPLLGGEHEIEVQTNVPLDRWSAQSNAEWCK VVQHEGKVVVSASANNIYKQRRAEITVAYGHQSYSITVSQFGKEPAILIGDKLQQEGYVEIIDAERETLTIPVATNLNLD NIIIPDTCNWIRLAEQPATFDAKTRAAEDVNKQELKFTLDKSTETDVRYCTIILQSSQNYSYTASFLIKQQPRGYIVEID EDKKIYEVKAMGETITIPFKVNSPAGEVSYTYEVEESAQSWITPVSLPASRALRDVSESFIIKANTEVENQPREGKITFK STNSTDKVPSQFVVTVKQAGFIATPPLNVINATATPGAGSIQLQWEIPEDVDFNKIKITYYDKVTKENKEILINDYKTTS YIIDDTYQCAGEYSFTINTYGPTGMETDSPVTITGISGEASEMERVTLTIDMLSDNANHVGDGGGLPALIDGKVNTYYHT KWNAPVTTEAHYVQIKLNKPLKDLCFEYDARQSGVNNGGDVKAATIYGSMNGEFFESMGNEEFNLPTTNGGHATAKNNVS GKQAYNYIRFTPTARRDKDPLDYTVAGSAWWNMSEIYLYRIRHDEAWAREQLGI
Sequences:
>Translated_614_residues MSMKKNILIIGLASIFGIASGLISCSPDYETEFKVETLVVPDKSQAPITFPLLGGEHEIEVQTNVPLDRWSAQSNAEWCK VVQHEGKVVVSASANNIYKQRRAEITVAYGHQSYSITVSQFGKEPAILIGDKLQQEGYVEIIDAERETLTIPVATNLNLD NIIIPDTCNWIRLAEQPATFDAKTRAAEDVNKQELKFTLDKSTETDVRYCTIILQSSQNYSYTASFLIKQQPRGYIVEID EDKKIYEVKAMGETITIPFKVNSPAGEVSYTYEVEESAQSWITPVSLPASRALRDVSESFIIKANTEVENQPREGKITFK STNSTDKVPSQFVVTVKQAGFIATPPLNVINATATPGAGSIQLQWEIPEDVDFNKIKITYYDKVTKENKEILINDYKTTS YIIDDTYQCAGEYSFTINTYGPTGMETDSPVTITGISGEASEMERVTLTIDMLSDNANHVGDGGGLPALIDGKVNTYYHT KWNAPVTTEAHYVQIKLNKPLKDLCFEYDARQSGVNNGGDVKAATIYGSMNGEFFESMGNEEFNLPTTNGGHATAKNNVS GKQAYNYIRFTPTARRDKDPLDYTVAGSAWWNMSEIYLYRIRHDEAWAREQLGI >Mature_613_residues SMKKNILIIGLASIFGIASGLISCSPDYETEFKVETLVVPDKSQAPITFPLLGGEHEIEVQTNVPLDRWSAQSNAEWCKV VQHEGKVVVSASANNIYKQRRAEITVAYGHQSYSITVSQFGKEPAILIGDKLQQEGYVEIIDAERETLTIPVATNLNLDN IIIPDTCNWIRLAEQPATFDAKTRAAEDVNKQELKFTLDKSTETDVRYCTIILQSSQNYSYTASFLIKQQPRGYIVEIDE DKKIYEVKAMGETITIPFKVNSPAGEVSYTYEVEESAQSWITPVSLPASRALRDVSESFIIKANTEVENQPREGKITFKS TNSTDKVPSQFVVTVKQAGFIATPPLNVINATATPGAGSIQLQWEIPEDVDFNKIKITYYDKVTKENKEILINDYKTTSY IIDDTYQCAGEYSFTINTYGPTGMETDSPVTITGISGEASEMERVTLTIDMLSDNANHVGDGGGLPALIDGKVNTYYHTK WNAPVTTEAHYVQIKLNKPLKDLCFEYDARQSGVNNGGDVKAATIYGSMNGEFFESMGNEEFNLPTTNGGHATAKNNVSG KQAYNYIRFTPTARRDKDPLDYTVAGSAWWNMSEIYLYRIRHDEAWAREQLGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68361; Mature: 68230
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMKKNILIIGLASIFGIASGLISCSPDYETEFKVETLVVPDKSQAPITFPLLGGEHEIE CCCCCCEEEEEHHHHHHHHHHHEECCCCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEE VQTNVPLDRWSAQSNAEWCKVVQHEGKVVVSASANNIYKQRRAEITVAYGHQSYSITVSQ EEECCCHHHCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHCCCEEEEEECCCEEEEEHHH FGKEPAILIGDKLQQEGYVEIIDAERETLTIPVATNLNLDNIIIPDTCNWIRLAEQPATF CCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEECCCCCCEECCCCCCEEEEECCCCCC DAKTRAAEDVNKQELKFTLDKSTETDVRYCTIILQSSQNYSYTASFLIKQQPRGYIVEID CCHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEC EDKKIYEVKAMGETITIPFKVNSPAGEVSYTYEVEESAQSWITPVSLPASRALRDVSESF CCCEEEEEEECCCEEEEEEEECCCCCCEEEEEEEHHHHHHCCCCCCCCHHHHHHHCCCCE IIKANTEVENQPREGKITFKSTNSTDKVPSQFVVTVKQAGFIATPPLNVINATATPGAGS EEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCEEECCCCCEEEECCCCCCCE IQLQWEIPEDVDFNKIKITYYDKVTKENKEILINDYKTTSYIIDDTYQCAGEYSFTINTY EEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEEEECC GPTGMETDSPVTITGISGEASEMERVTLTIDMLSDNANHVGDGGGLPALIDGKVNTYYHT CCCCCCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEECCEEEEEEE KWNAPVTTEAHYVQIKLNKPLKDLCFEYDARQSGVNNGGDVKAATIYGSMNGEFFESMGN EECCCEECCEEEEEEEECCCHHHHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHCCC EEFNLPTTNGGHATAKNNVSGKQAYNYIRFTPTARRDKDPLDYTVAGSAWWNMSEIYLYR CCCCCCCCCCCCCEECCCCCCHHHCEEEEECCCCCCCCCCCCEEEECCCCCCCEEEEEEE IRHDEAWAREQLGI EECCCHHHHHHCCC >Mature Secondary Structure SMKKNILIIGLASIFGIASGLISCSPDYETEFKVETLVVPDKSQAPITFPLLGGEHEIE CCCCCEEEEEHHHHHHHHHHHEECCCCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEE VQTNVPLDRWSAQSNAEWCKVVQHEGKVVVSASANNIYKQRRAEITVAYGHQSYSITVSQ EEECCCHHHCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHCCCEEEEEECCCEEEEEHHH FGKEPAILIGDKLQQEGYVEIIDAERETLTIPVATNLNLDNIIIPDTCNWIRLAEQPATF CCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEECCCCCCEECCCCCCEEEEECCCCCC DAKTRAAEDVNKQELKFTLDKSTETDVRYCTIILQSSQNYSYTASFLIKQQPRGYIVEID CCHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEC EDKKIYEVKAMGETITIPFKVNSPAGEVSYTYEVEESAQSWITPVSLPASRALRDVSESF CCCEEEEEEECCCEEEEEEEECCCCCCEEEEEEEHHHHHHCCCCCCCCHHHHHHHCCCCE IIKANTEVENQPREGKITFKSTNSTDKVPSQFVVTVKQAGFIATPPLNVINATATPGAGS EEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCEEECCCCCEEEECCCCCCCE IQLQWEIPEDVDFNKIKITYYDKVTKENKEILINDYKTTSYIIDDTYQCAGEYSFTINTY EEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEEEECC GPTGMETDSPVTITGISGEASEMERVTLTIDMLSDNANHVGDGGGLPALIDGKVNTYYHT CCCCCCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEECCEEEEEEE KWNAPVTTEAHYVQIKLNKPLKDLCFEYDARQSGVNNGGDVKAATIYGSMNGEFFESMGN EECCCEECCEEEEEEEECCCHHHHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHCCC EEFNLPTTNGGHATAKNNVSGKQAYNYIRFTPTARRDKDPLDYTVAGSAWWNMSEIYLYR CCCCCCCCCCCCCEECCCCCCHHHCEEEEECCCCCCCCCCCCEEEECCCCCCCEEEEEEE IRHDEAWAREQLGI EECCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA