| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29349705
Identifier: 29349705
GI number: 29349705
Start: 5660608
End: 5662659
Strand: Reverse
Name: 29349705
Synonym: BT_4297
Alternate gene names: NA
Gene position: 5662659-5660608 (Counterclockwise)
Preceding gene: 29349706
Following gene: 29349704
Centisome position: 90.45
GC content: 46.54
Gene sequence:
>2052_bases ATGAAAAAGTTATTCAAAATAATATTGGGAGCAACAGTAGGAAGTACACTACTACTCAGTTCCTGCAATTTTCTGGATGT AGACCCATACTTCGAAGCTACTTTCAAAGAAGACTCCATCTTTCACAGCAAGAAAAATGCTGAAGGTTATCTCTGGAACA CTCCGAAAGGTTTTCCCGACGCAGGGGCTATCTGGGGAAATTCCTGGAATCCGGGGGAATCTGCTTCGGACGAAATAACA CTTAAATATCAGACAAATGAATTTTGGGGACTACAATTTTCCGTAGGTACCATCAACAGCAGAAATCTGCCTATCCAAAA CCAATGGTACGACATGTATGTCATTGTAGCAAGATGTAACAAAATGCTTAAAGAAGTCTACAATGTACCTGATATGAACG AAATGGACAGAAGACGTTATATCGGATATGTTCACTTTATGCGTGGGTACGCTTATTATCATCTTTTGATGAACTGGGGA CCGTTGATTATCGTGGGCGATGAAGAACTGAGCACCTCCGAACCTGCCGAATATTATAATCGCGAACGGGCTACCTATGA TGAGTCTGTAGATTATATATGCGATGAATTCCGCCTGGCAACTCAAGGCATCTATTCGGCGGATGAGCAAAGCGTCAACT ATTATCAACGTCCGACCAAAGGAGCAGCCATGGCACTCATCGCCCGTTTGCGCCTCTTCCAGGCTTCACCGCTTTTCAAT GGCGGAGCTGCAGCCCGTAAATGTTTCGGGACCTGGAAACGTAAAAGCGACGGAGCCTACTATGTCAATCAAGAGTATGA CCCGAGACGCTGGGCCGTTGCAGCAGCTGCCGCCAAACAGCTGACCAAAATGGGATACGAGCTACATACAGTGGAAGCAG ATGCCCAGAACCCATATCCTCTGGCCTCCAATGTCCCTACTGCTAACTTCCCTGACGGAGCAGGCAATATCGATCCTTAT CACTCTTACTCCGACATGTTCACAGGAGAAGGTATCATACAGACTAATAAAGAATTCATCTGGGCGATGGAATCCAGTAA CGTCACTAACTATACCCATCACTCATTCCCTGTCAAGTTTGGCGGATGGGGTTCAATGTCTGTGCCGCAGAGGGTAATTG ATTGCTATCTGATGGCAGATGGGCGGACTATTCATAATTCATCGGCAGAATATCCATATGAACCGGACTTCAGCAGACTC ACCGGCGAATCCAAAAAACTGGGGACATACCTACTGAGGGAAAACGTACCTATGATGTACGCCAATCGTTCGGCACGCTT CTATGCCTCGATAGGTTTTCCGGGTCGCTACTGGCCGATGAGTTCAGCTTCTACCGACGCCTCCTACGTCAATCAGCAAT TCTGGTATTCTCACGATGATACCAATGCCGGAATTGCCGGTGCCGGAAATAACGTAAACGACTACAGTGTCAGCGGTTAT GTTCCCGTCAAATACATTCATCCGGACGACTCATGGGCTAACGGCAAAGGGAGTGTAAAAGGCGCATTCGTCACCAGCCC TAAACCGTTCCCTATCATTCGTTATGGTGAAGTGCTACTGGAATATGTAGAAGCATTGAACCGTGTAGAAGGTACAGTGA CCGTAGAAGTATCCGACAATACAGGTACACTTATTGAGGAAACCGTTAGCCGTGATCCGGCAGAAATGGCTAAATATTTC AACATGATACGTTATCGCGTCGGCTTGCCGGGAGTAGATGCCAACGACATGGCAGAAGCAGACAATTTTGAAAAAATCAT CCGCAATGAACGTCAGGTAGAGCTCTTTAACGAAGGATACCGATATTTCGATACGCGCAGATGGGGAACCTATCTGGACG AAGATGCCAACAGCTCCAACTGGCGGGGACTGGATGTGACAAAAGACCGTACAAATGCCAACGGTAATGAAGGATTCTGG AATATTGTGACGATCAATACACAAAATGTGCGAGACCGCATTGCACTGCCTAAAATGGTATTCTTACCGATCCGCCATGA TGAATTGCTGAAGGTTCCCAATGCCGACCAGAATTTCGGATGGGACAGATAA
Upstream 100 bases:
>100_bases TGATCCGGAACAGGCATCTGCAAACGGGGCCGCTTATCCGATACCGGCAACTTACACGTTCCAGGTTTATCTTAAATTCT AAAAATAATATAGAACACTC
Downstream 100 bases:
>100_bases TATCAAAACATGAATAACAGACTGAATATGAAAAAGAAATTTAATATAATGCTCTGCACCCTTATAGGTGTATTGAGTGC TTGCAATGAATACGATTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 683; Mature: 683
Protein sequence:
>683_residues MKKLFKIILGATVGSTLLLSSCNFLDVDPYFEATFKEDSIFHSKKNAEGYLWNTPKGFPDAGAIWGNSWNPGESASDEIT LKYQTNEFWGLQFSVGTINSRNLPIQNQWYDMYVIVARCNKMLKEVYNVPDMNEMDRRRYIGYVHFMRGYAYYHLLMNWG PLIIVGDEELSTSEPAEYYNRERATYDESVDYICDEFRLATQGIYSADEQSVNYYQRPTKGAAMALIARLRLFQASPLFN GGAAARKCFGTWKRKSDGAYYVNQEYDPRRWAVAAAAAKQLTKMGYELHTVEADAQNPYPLASNVPTANFPDGAGNIDPY HSYSDMFTGEGIIQTNKEFIWAMESSNVTNYTHHSFPVKFGGWGSMSVPQRVIDCYLMADGRTIHNSSAEYPYEPDFSRL TGESKKLGTYLLRENVPMMYANRSARFYASIGFPGRYWPMSSASTDASYVNQQFWYSHDDTNAGIAGAGNNVNDYSVSGY VPVKYIHPDDSWANGKGSVKGAFVTSPKPFPIIRYGEVLLEYVEALNRVEGTVTVEVSDNTGTLIEETVSRDPAEMAKYF NMIRYRVGLPGVDANDMAEADNFEKIIRNERQVELFNEGYRYFDTRRWGTYLDEDANSSNWRGLDVTKDRTNANGNEGFW NIVTINTQNVRDRIALPKMVFLPIRHDELLKVPNADQNFGWDR
Sequences:
>Translated_683_residues MKKLFKIILGATVGSTLLLSSCNFLDVDPYFEATFKEDSIFHSKKNAEGYLWNTPKGFPDAGAIWGNSWNPGESASDEIT LKYQTNEFWGLQFSVGTINSRNLPIQNQWYDMYVIVARCNKMLKEVYNVPDMNEMDRRRYIGYVHFMRGYAYYHLLMNWG PLIIVGDEELSTSEPAEYYNRERATYDESVDYICDEFRLATQGIYSADEQSVNYYQRPTKGAAMALIARLRLFQASPLFN GGAAARKCFGTWKRKSDGAYYVNQEYDPRRWAVAAAAAKQLTKMGYELHTVEADAQNPYPLASNVPTANFPDGAGNIDPY HSYSDMFTGEGIIQTNKEFIWAMESSNVTNYTHHSFPVKFGGWGSMSVPQRVIDCYLMADGRTIHNSSAEYPYEPDFSRL TGESKKLGTYLLRENVPMMYANRSARFYASIGFPGRYWPMSSASTDASYVNQQFWYSHDDTNAGIAGAGNNVNDYSVSGY VPVKYIHPDDSWANGKGSVKGAFVTSPKPFPIIRYGEVLLEYVEALNRVEGTVTVEVSDNTGTLIEETVSRDPAEMAKYF NMIRYRVGLPGVDANDMAEADNFEKIIRNERQVELFNEGYRYFDTRRWGTYLDEDANSSNWRGLDVTKDRTNANGNEGFW NIVTINTQNVRDRIALPKMVFLPIRHDELLKVPNADQNFGWDR >Mature_683_residues MKKLFKIILGATVGSTLLLSSCNFLDVDPYFEATFKEDSIFHSKKNAEGYLWNTPKGFPDAGAIWGNSWNPGESASDEIT LKYQTNEFWGLQFSVGTINSRNLPIQNQWYDMYVIVARCNKMLKEVYNVPDMNEMDRRRYIGYVHFMRGYAYYHLLMNWG PLIIVGDEELSTSEPAEYYNRERATYDESVDYICDEFRLATQGIYSADEQSVNYYQRPTKGAAMALIARLRLFQASPLFN GGAAARKCFGTWKRKSDGAYYVNQEYDPRRWAVAAAAAKQLTKMGYELHTVEADAQNPYPLASNVPTANFPDGAGNIDPY HSYSDMFTGEGIIQTNKEFIWAMESSNVTNYTHHSFPVKFGGWGSMSVPQRVIDCYLMADGRTIHNSSAEYPYEPDFSRL TGESKKLGTYLLRENVPMMYANRSARFYASIGFPGRYWPMSSASTDASYVNQQFWYSHDDTNAGIAGAGNNVNDYSVSGY VPVKYIHPDDSWANGKGSVKGAFVTSPKPFPIIRYGEVLLEYVEALNRVEGTVTVEVSDNTGTLIEETVSRDPAEMAKYF NMIRYRVGLPGVDANDMAEADNFEKIIRNERQVELFNEGYRYFDTRRWGTYLDEDANSSNWRGLDVTKDRTNANGNEGFW NIVTINTQNVRDRIALPKMVFLPIRHDELLKVPNADQNFGWDR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77763; Mature: 77763
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLFKIILGATVGSTLLLSSCNFLDVDPYFEATFKEDSIFHSKKNAEGYLWNTPKGFPD CHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHEECCCCCCCCCCCCCCCEEECCCCCCCC AGAIWGNSWNPGESASDEITLKYQTNEFWGLQFSVGTINSRNLPIQNQWYDMYVIVARCN CCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH KMLKEVYNVPDMNEMDRRRYIGYVHFMRGYAYYHLLMNWGPLIIVGDEELSTSEPAEYYN HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHC RERATYDESVDYICDEFRLATQGIYSADEQSVNYYQRPTKGAAMALIARLRLFQASPLFN CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCC GGAAARKCFGTWKRKSDGAYYVNQEYDPRRWAVAAAAAKQLTKMGYELHTVEADAQNPYP CCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC LASNVPTANFPDGAGNIDPYHSYSDMFTGEGIIQTNKEFIWAMESSNVTNYTHHSFPVKF CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEECCEEEEEEECCCCCCEECCCCCEEE GGWGSMSVPQRVIDCYLMADGRTIHNSSAEYPYEPDFSRLTGESKKLGTYLLRENVPMMY CCCCCCCHHHHHEEEEEEECCEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCEEE ANRSARFYASIGFPGRYWPMSSASTDASYVNQQFWYSHDDTNAGIAGAGNNVNDYSVSGY ECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCEECCCCCCCCEEECCE VPVKYIHPDDSWANGKGSVKGAFVTSPKPFPIIRYGEVLLEYVEALNRVEGTVTVEVSDN EEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEECCC TGTLIEETVSRDPAEMAKYFNMIRYRVGLPGVDANDMAEADNFEKIIRNERQVELFNEGY CCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHCCC RYFDTRRWGTYLDEDANSSNWRGLDVTKDRTNANGNEGFWNIVTINTQNVRDRIALPKMV CEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCCHHHHCCCCEE FLPIRHDELLKVPNADQNFGWDR EEECCCHHHEECCCCCCCCCCCC >Mature Secondary Structure MKKLFKIILGATVGSTLLLSSCNFLDVDPYFEATFKEDSIFHSKKNAEGYLWNTPKGFPD CHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHEECCCCCCCCCCCCCCCEEECCCCCCCC AGAIWGNSWNPGESASDEITLKYQTNEFWGLQFSVGTINSRNLPIQNQWYDMYVIVARCN CCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH KMLKEVYNVPDMNEMDRRRYIGYVHFMRGYAYYHLLMNWGPLIIVGDEELSTSEPAEYYN HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHC RERATYDESVDYICDEFRLATQGIYSADEQSVNYYQRPTKGAAMALIARLRLFQASPLFN CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCC GGAAARKCFGTWKRKSDGAYYVNQEYDPRRWAVAAAAAKQLTKMGYELHTVEADAQNPYP CCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC LASNVPTANFPDGAGNIDPYHSYSDMFTGEGIIQTNKEFIWAMESSNVTNYTHHSFPVKF CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEECCEEEEEEECCCCCCEECCCCCEEE GGWGSMSVPQRVIDCYLMADGRTIHNSSAEYPYEPDFSRLTGESKKLGTYLLRENVPMMY CCCCCCCHHHHHEEEEEEECCEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCEEE ANRSARFYASIGFPGRYWPMSSASTDASYVNQQFWYSHDDTNAGIAGAGNNVNDYSVSGY ECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCEECCCCCCCCEEECCE VPVKYIHPDDSWANGKGSVKGAFVTSPKPFPIIRYGEVLLEYVEALNRVEGTVTVEVSDN EEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEECCC TGTLIEETVSRDPAEMAKYFNMIRYRVGLPGVDANDMAEADNFEKIIRNERQVELFNEGY CCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHCCC RYFDTRRWGTYLDEDANSSNWRGLDVTKDRTNANGNEGFWNIVTINTQNVRDRIALPKMV CEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCCHHHHCCCCEE FLPIRHDELLKVPNADQNFGWDR EEECCCHHHEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA