| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349681
Identifier: 29349681
GI number: 29349681
Start: 5631593
End: 5633152
Strand: Reverse
Name: 29349681
Synonym: BT_4273
Alternate gene names: NA
Gene position: 5633152-5631593 (Counterclockwise)
Preceding gene: 29349682
Following gene: 29349671
Centisome position: 89.98
GC content: 32.82
Gene sequence:
>1560_bases ATGATACCAGAACAGATAAATGGAGATAGCTGCCAAGTATCTATAAAAAGTAAAACAAGAGAGATAACTAATGCATGGCT TACAGTTACAGCTCTCAACAGTAATGAAGTGGCAGTAGCATCTGAAGACAAAAAGCTGGAACATCCGGAATGGACGGATA ATGTACTATCATTAAAATTGACGGACGGGAAATATAAAGCCAAAGCATTACGAATTAATATCTTTTATTTTGGAAATAGT AATCCGGATCAACAAATATGTTTAAGTGACCTGCAAATCAATATTGATGGAAAAGATCTGGGGAAACAATCTATTGAAGA TCAAACTGTCATTAACACAAACATTCACAAAAGACTTATCAAAAATAAGATTATAAAATTATCTCATGACAATGATAGTA CTCTGCTTACGCGAATAAATGAATTGAAAGATAAAAAAATCATAGGATTAGGAGAATGTACTCATGGTTCGCAAGAATTA AAAACTGCGGTTATTCAATTTTCAAAGAATCTCATTCAAAATGGAGATTGCAGGTTTGTTCTGTTAGAGGCTCCCGTTGA TGCCTTACTACTGGTCGATGCATATATACAAGGAATTATATCATCACCCGACATTGAAAAACAAATAAAAGAAATCATGC AGATGTTTTTTACAAACAATAGCGAGCTTATGGGCTTTGTGGATTGGTTAAAGGAGTATAACAAGACATCTCTTCGTAAA GTACACCTATCTGGTATGGATTATAAAGACATCATAAGTCCATATTTTTATGACTACCTATTAAATCTATTGGATAAAGA AAAAGGGCGATACTATTTATTAAAACTATATGATAAAGAATTTAAAGATATATTGCAATATGCTCATGAGGATGTTTATT TAAAAACGAAGTTGGGAGAAGAGAATTTTTCGCTTTTTACCCAATACATAGAAACTTGTATCAATTTGGGTATTGGCTCC CAATTGCCTCCTCCTGATTATAGGGATTTCTATATGTTTACTTATACCAAACAACTTGCTGATCATTTCTTAAAAAAAGA TGAGAAGCTAATCATTCACGCTCATAGTGCCCATCTTTCTAACTTGGAACGTTTTGATAGTTTTCCGTATAAAGAAATCC CAGCAGGGAATCGTTTAAAGAAATATTATGGAGATAAGTATTACTCAATTGGTTTTCAAGTTGGAAAAGGAACATTTACT CAGGAATCCGCCGGTTATTTTAGCAAGCTGATAGCATTACCATTATCCAAGCCACCATATAATAGTTTTGAACATTTAGC TCTAAGCACAAAAGAAAGTTATTTCTATTATCCATCCAAATATATGGATGACGGTATTGTTGAGTTATTAGTTATTCCAA GAATGGCACGTTATCAGAGACAATATCAATTTCATTCTGTGAAAAACTGGTGTGATGCCTATGTCTTTATACAAGAGAGC ACGCCGCTCAAAAATGTAACGACTGGAGAATTCGAAACAATGTTCAAACAATTTCTTAGAATAAAGGAGTTGATAAAAGA ATTGAAAGCAAACGAAGAAAAGATAAGAAATAAAGAGTAA
Upstream 100 bases:
>100_bases AATGCAAATAAAGAAAGATGATAATATAGTTTATAAAATATCATATACTCCACCTCCATCAAAAAATAAGAATATGATAT TTATTACATCTTGCACTATC
Downstream 100 bases:
>100_bases CTTCTACTCAAAAGTAAAAGCTACTCTTCATTCCATATAAGATTGGGGATATTCAGTAAGTTTCCCTATTTATTTGCTTT AATACGTTGCCCGTCCGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MIPEQINGDSCQVSIKSKTREITNAWLTVTALNSNEVAVASEDKKLEHPEWTDNVLSLKLTDGKYKAKALRINIFYFGNS NPDQQICLSDLQINIDGKDLGKQSIEDQTVINTNIHKRLIKNKIIKLSHDNDSTLLTRINELKDKKIIGLGECTHGSQEL KTAVIQFSKNLIQNGDCRFVLLEAPVDALLLVDAYIQGIISSPDIEKQIKEIMQMFFTNNSELMGFVDWLKEYNKTSLRK VHLSGMDYKDIISPYFYDYLLNLLDKEKGRYYLLKLYDKEFKDILQYAHEDVYLKTKLGEENFSLFTQYIETCINLGIGS QLPPPDYRDFYMFTYTKQLADHFLKKDEKLIIHAHSAHLSNLERFDSFPYKEIPAGNRLKKYYGDKYYSIGFQVGKGTFT QESAGYFSKLIALPLSKPPYNSFEHLALSTKESYFYYPSKYMDDGIVELLVIPRMARYQRQYQFHSVKNWCDAYVFIQES TPLKNVTTGEFETMFKQFLRIKELIKELKANEEKIRNKE
Sequences:
>Translated_519_residues MIPEQINGDSCQVSIKSKTREITNAWLTVTALNSNEVAVASEDKKLEHPEWTDNVLSLKLTDGKYKAKALRINIFYFGNS NPDQQICLSDLQINIDGKDLGKQSIEDQTVINTNIHKRLIKNKIIKLSHDNDSTLLTRINELKDKKIIGLGECTHGSQEL KTAVIQFSKNLIQNGDCRFVLLEAPVDALLLVDAYIQGIISSPDIEKQIKEIMQMFFTNNSELMGFVDWLKEYNKTSLRK VHLSGMDYKDIISPYFYDYLLNLLDKEKGRYYLLKLYDKEFKDILQYAHEDVYLKTKLGEENFSLFTQYIETCINLGIGS QLPPPDYRDFYMFTYTKQLADHFLKKDEKLIIHAHSAHLSNLERFDSFPYKEIPAGNRLKKYYGDKYYSIGFQVGKGTFT QESAGYFSKLIALPLSKPPYNSFEHLALSTKESYFYYPSKYMDDGIVELLVIPRMARYQRQYQFHSVKNWCDAYVFIQES TPLKNVTTGEFETMFKQFLRIKELIKELKANEEKIRNKE >Mature_519_residues MIPEQINGDSCQVSIKSKTREITNAWLTVTALNSNEVAVASEDKKLEHPEWTDNVLSLKLTDGKYKAKALRINIFYFGNS NPDQQICLSDLQINIDGKDLGKQSIEDQTVINTNIHKRLIKNKIIKLSHDNDSTLLTRINELKDKKIIGLGECTHGSQEL KTAVIQFSKNLIQNGDCRFVLLEAPVDALLLVDAYIQGIISSPDIEKQIKEIMQMFFTNNSELMGFVDWLKEYNKTSLRK VHLSGMDYKDIISPYFYDYLLNLLDKEKGRYYLLKLYDKEFKDILQYAHEDVYLKTKLGEENFSLFTQYIETCINLGIGS QLPPPDYRDFYMFTYTKQLADHFLKKDEKLIIHAHSAHLSNLERFDSFPYKEIPAGNRLKKYYGDKYYSIGFQVGKGTFT QESAGYFSKLIALPLSKPPYNSFEHLALSTKESYFYYPSKYMDDGIVELLVIPRMARYQRQYQFHSVKNWCDAYVFIQES TPLKNVTTGEFETMFKQFLRIKELIKELKANEEKIRNKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60362; Mature: 60362
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPEQINGDSCQVSIKSKTREITNAWLTVTALNSNEVAVASEDKKLEHPEWTDNVLSLKL CCCCCCCCCCEEEEEHHHHHHHCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCEEEEEE TDGKYKAKALRINIFYFGNSNPDQQICLSDLQINIDGKDLGKQSIEDQTVINTNIHKRLI ECCCEEEEEEEEEEEEECCCCCCHHHEEECCEEEECCHHCCCCCCCCCEEECHHHHHHHH KNKIIKLSHDNDSTLLTRINELKDKKIIGLGECTHGSQELKTAVIQFSKNLIQNGDCRFV HCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEE LLEAPVDALLLVDAYIQGIISSPDIEKQIKEIMQMFFTNNSELMGFVDWLKEYNKTSLRK EEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE VHLSGMDYKDIISPYFYDYLLNLLDKEKGRYYLLKLYDKEFKDILQYAHEDVYLKTKLGE EEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCEEEEEECCC ENFSLFTQYIETCINLGIGSQLPPPDYRDFYMFTYTKQLADHFLKKDEKLIIHAHSAHLS CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCHHHH NLERFDSFPYKEIPAGNRLKKYYGDKYYSIGFQVGKGTFTQESAGYFSKLIALPLSKPPY HHHHHCCCCCCCCCCCCHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCC NSFEHLALSTKESYFYYPSKYMDDGIVELLVIPRMARYQRQYQFHSVKNWCDAYVFIQES CCHHHHEEECCCCEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC TPLKNVTTGEFETMFKQFLRIKELIKELKANEEKIRNKE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC >Mature Secondary Structure MIPEQINGDSCQVSIKSKTREITNAWLTVTALNSNEVAVASEDKKLEHPEWTDNVLSLKL CCCCCCCCCCEEEEEHHHHHHHCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCEEEEEE TDGKYKAKALRINIFYFGNSNPDQQICLSDLQINIDGKDLGKQSIEDQTVINTNIHKRLI ECCCEEEEEEEEEEEEECCCCCCHHHEEECCEEEECCHHCCCCCCCCCEEECHHHHHHHH KNKIIKLSHDNDSTLLTRINELKDKKIIGLGECTHGSQELKTAVIQFSKNLIQNGDCRFV HCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEE LLEAPVDALLLVDAYIQGIISSPDIEKQIKEIMQMFFTNNSELMGFVDWLKEYNKTSLRK EEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE VHLSGMDYKDIISPYFYDYLLNLLDKEKGRYYLLKLYDKEFKDILQYAHEDVYLKTKLGE EEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCEEEEEECCC ENFSLFTQYIETCINLGIGSQLPPPDYRDFYMFTYTKQLADHFLKKDEKLIIHAHSAHLS CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCHHHH NLERFDSFPYKEIPAGNRLKKYYGDKYYSIGFQVGKGTFTQESAGYFSKLIALPLSKPPY HHHHHCCCCCCCCCCCCHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCC NSFEHLALSTKESYFYYPSKYMDDGIVELLVIPRMARYQRQYQFHSVKNWCDAYVFIQES CCHHHHEEECCCCEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC TPLKNVTTGEFETMFKQFLRIKELIKELKANEEKIRNKE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA