Click here to switch to the map view.

The map label for this gene is yesY [H]

Identifier: 29349581

GI number: 29349581

Start: 5493795

End: 5495369

Strand: Reverse

Name: yesY [H]

Synonym: BT_4173

Alternate gene names: 29349581

Gene position: 5495369-5493795 (Counterclockwise)

Preceding gene: 29349582

Following gene: 29349569

Centisome position: 87.78

GC content: 47.43

Gene sequence:

>1575_bases
ATGCAGGCACAAAACAACATTGCTTCTCCAATGAAAGATGTGAATCAGGTGGTAGACAACACACTGGACAGTCTGAATAA
AGCACGCACGGCACGCCCCGTTGCCGGAGCAAGCCGTAAAGGTAACAATCCGGTCTTATTCCTGGTCGGCAACTCTACCA
TGCGCACCGGTACTTTAGGAAACGGCAACAACGGCCAATGGGGCTGGGGATATTACGCAGGAGATTATTTCGACTCCAAC
CGAATCACCGTTGAGAATCATGCTTTGGGAGGAACTAGCAGCCGCACCTTCTACAACCGCCTCTGGCCGGATGTAATCAA
AGGCGTGCAAGCCGGAGACTGGGTAATCATCGAACTGGGACACAATGATAACGGCCCCTATGACAGCGGACGTGCCCGCG
CCTCCATTCCGGGAATCGGCAAGGACAGTCTGAATGTGACAATCAAGGAAACCGGAGTCAAAGAGACTGTATATACCTAC
GGAGAATATATGCGCCGTTTCATCAACGATGTAAAAGCCAAAGGAGCACACCCGATTTTATTCTCCCTGACTCCCCGCAA
TGCCTGGGCAGACAAAGACAGCACCATCATTACCCGTGTCAACAAAACATTCGGTTTGTGGGCAAAGCAAGTAGCGGAAG
AACAGAATGTTCCTTTCATTGATTTGAATGATATCAGCGCCCGCAAGTTTGAGAAATTCGGCAAGAATAAAGTGAAATAT
ATGTTCTATATCGACCGCATTCATACCAGCGCTTTTGGTGCCAAAGTGAATGCCGAATCTGCCGCTGACGGAATACGCGC
CTGCGAAGGGCTGGAATTGGCAAAGTATCTGAAACCTGTTGAAAAGGATGAGGCTACCGGTTCGAGCCGCAAAGAAGGAC
GCCCGGTATTGTTTACCATCGGCGACAGTACGGTTAAAAATAAAGATAACGATAAAAACGGTATGTGGGGATGGGGCAGC
GTGATAGCAGATGAGTTTGATCTGAATAAGATATCTGTTGAGAATTGTGCTATGGCAGGACGCAGCGCCCGTACATTCCT
TGACGAAGGTCGCTGGGATAAAGTATATCATGCACTCCAACCGGGAGACTTTGTTCTTATCCAGTTCGGACACAATGACG
CTGGAGAGATAAATACCGGAAAAGCCCGTGCCGAATTGCCCGGCTCCGGAGAAGAAAGCAAAGTATTTTTAATGGAGAAA
ACAGGTAAATATCAAGTCATTTATACTTTCGGCTGGTATCTCAGGAAGTTTATCATGGACGTTCAGGAAAAGGGTGCGAT
ACCTATCGTTTTAAGCCATACCCCACGCAATAAGTGGAAAGACGGAAAGATAGAACGCAACACTGCCTCCTTCGGCAAAT
GGACACGCGAAGCTGCCGAAGCTACCGGAGCCTATTTTATCGACCTGAATAAAATAAGTGCTGACAAGCTCGAAAAGAAA
GGTATCAAGAAAGCGGCAGATTATTATAACAATGACCATACGCATACTTCTTTGAAAGGAGCGCACATGAATGCCAAAAG
CATCGCAGATGGACTGAAAATGGCTGATTGCCCGTTGAAACAGTACTTGAAATAA

Upstream 100 bases:

>100_bases
AAGTTTACAAGTTAAAATAAGAGCATTATTTATCAGGTAAATGAAAAACAAGGTATTTCACTGCTTATGCTGGCTCACAG
CCATCATATGCAGCTTGCAG

Downstream 100 bases:

>100_bases
GAGACAGACTCATCTGATATATTCATAAAGCGGTTAATGCATTTCACTGACAATGCATTAACCGCTTTCTTCTAACTATT
ATTCATCCATCGGAATGACC

Product: putative rhamnogalacturonan acetylesterase

Products: NA

Alternate protein names: RGAE [H]

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MQAQNNIASPMKDVNQVVDNTLDSLNKARTARPVAGASRKGNNPVLFLVGNSTMRTGTLGNGNNGQWGWGYYAGDYFDSN
RITVENHALGGTSSRTFYNRLWPDVIKGVQAGDWVIIELGHNDNGPYDSGRARASIPGIGKDSLNVTIKETGVKETVYTY
GEYMRRFINDVKAKGAHPILFSLTPRNAWADKDSTIITRVNKTFGLWAKQVAEEQNVPFIDLNDISARKFEKFGKNKVKY
MFYIDRIHTSAFGAKVNAESAADGIRACEGLELAKYLKPVEKDEATGSSRKEGRPVLFTIGDSTVKNKDNDKNGMWGWGS
VIADEFDLNKISVENCAMAGRSARTFLDEGRWDKVYHALQPGDFVLIQFGHNDAGEINTGKARAELPGSGEESKVFLMEK
TGKYQVIYTFGWYLRKFIMDVQEKGAIPIVLSHTPRNKWKDGKIERNTASFGKWTREAAEATGAYFIDLNKISADKLEKK
GIKKAADYYNNDHTHTSLKGAHMNAKSIADGLKMADCPLKQYLK

Sequences:

>Translated_524_residues
MQAQNNIASPMKDVNQVVDNTLDSLNKARTARPVAGASRKGNNPVLFLVGNSTMRTGTLGNGNNGQWGWGYYAGDYFDSN
RITVENHALGGTSSRTFYNRLWPDVIKGVQAGDWVIIELGHNDNGPYDSGRARASIPGIGKDSLNVTIKETGVKETVYTY
GEYMRRFINDVKAKGAHPILFSLTPRNAWADKDSTIITRVNKTFGLWAKQVAEEQNVPFIDLNDISARKFEKFGKNKVKY
MFYIDRIHTSAFGAKVNAESAADGIRACEGLELAKYLKPVEKDEATGSSRKEGRPVLFTIGDSTVKNKDNDKNGMWGWGS
VIADEFDLNKISVENCAMAGRSARTFLDEGRWDKVYHALQPGDFVLIQFGHNDAGEINTGKARAELPGSGEESKVFLMEK
TGKYQVIYTFGWYLRKFIMDVQEKGAIPIVLSHTPRNKWKDGKIERNTASFGKWTREAAEATGAYFIDLNKISADKLEKK
GIKKAADYYNNDHTHTSLKGAHMNAKSIADGLKMADCPLKQYLK
>Mature_524_residues
MQAQNNIASPMKDVNQVVDNTLDSLNKARTARPVAGASRKGNNPVLFLVGNSTMRTGTLGNGNNGQWGWGYYAGDYFDSN
RITVENHALGGTSSRTFYNRLWPDVIKGVQAGDWVIIELGHNDNGPYDSGRARASIPGIGKDSLNVTIKETGVKETVYTY
GEYMRRFINDVKAKGAHPILFSLTPRNAWADKDSTIITRVNKTFGLWAKQVAEEQNVPFIDLNDISARKFEKFGKNKVKY
MFYIDRIHTSAFGAKVNAESAADGIRACEGLELAKYLKPVEKDEATGSSRKEGRPVLFTIGDSTVKNKDNDKNGMWGWGS
VIADEFDLNKISVENCAMAGRSARTFLDEGRWDKVYHALQPGDFVLIQFGHNDAGEINTGKARAELPGSGEESKVFLMEK
TGKYQVIYTFGWYLRKFIMDVQEKGAIPIVLSHTPRNKWKDGKIERNTASFGKWTREAAEATGAYFIDLNKISADKLEKK
GIKKAADYYNNDHTHTSLKGAHMNAKSIADGLKMADCPLKQYLK

Specific function: May play role in the degradation of rhamnogalacturonan derived from plant cell walls. Probably has broad substrate specificity and may degrade several types of acetylated substrates [H]

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'GDSL' lipolytic enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 58263; Mature: 58263

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAQNNIASPMKDVNQVVDNTLDSLNKARTARPVAGASRKGNNPVLFLVGNSTMRTGTLG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEECCCC
NGNNGQWGWGYYAGDYFDSNRITVENHALGGTSSRTFYNRLWPDVIKGVQAGDWVIIELG
CCCCCCCCCEEECCCEECCCCEEEECCCCCCCCCCHHHHHHCHHHHCCCCCCCEEEEEEC
HNDNGPYDSGRARASIPGIGKDSLNVTIKETGVKETVYTYGEYMRRFINDVKAKGAHPIL
CCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
FSLTPRNAWADKDSTIITRVNKTFGLWAKQVAEEQNVPFIDLNDISARKFEKFGKNKVKY
EEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCEEE
MFYIDRIHTSAFGAKVNAESAADGIRACEGLELAKYLKPVEKDEATGSSRKEGRPVLFTI
EEEEEEHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
GDSTVKNKDNDKNGMWGWGSVIADEFDLNKISVENCAMAGRSARTFLDEGRWDKVYHALQ
CCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEHHHHHHCCCHHHHHHHCCCHHHHHHHCC
PGDFVLIQFGHNDAGEINTGKARAELPGSGEESKVFLMEKTGKYQVIYTFGWYLRKFIMD
CCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHH
VQEKGAIPIVLSHTPRNKWKDGKIERNTASFGKWTREAAEATGAYFIDLNKISADKLEKK
HHHCCCEEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
GIKKAADYYNNDHTHTSLKGAHMNAKSIADGLKMADCPLKQYLK
HHHHHHHHCCCCCCCCEECCCCCCHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure
MQAQNNIASPMKDVNQVVDNTLDSLNKARTARPVAGASRKGNNPVLFLVGNSTMRTGTLG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEECCCC
NGNNGQWGWGYYAGDYFDSNRITVENHALGGTSSRTFYNRLWPDVIKGVQAGDWVIIELG
CCCCCCCCCEEECCCEECCCCEEEECCCCCCCCCCHHHHHHCHHHHCCCCCCCEEEEEEC
HNDNGPYDSGRARASIPGIGKDSLNVTIKETGVKETVYTYGEYMRRFINDVKAKGAHPIL
CCCCCCCCCCCCEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
FSLTPRNAWADKDSTIITRVNKTFGLWAKQVAEEQNVPFIDLNDISARKFEKFGKNKVKY
EEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCEEE
MFYIDRIHTSAFGAKVNAESAADGIRACEGLELAKYLKPVEKDEATGSSRKEGRPVLFTI
EEEEEEHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
GDSTVKNKDNDKNGMWGWGSVIADEFDLNKISVENCAMAGRSARTFLDEGRWDKVYHALQ
CCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEHHHHHHCCCHHHHHHHCCCHHHHHHHCC
PGDFVLIQFGHNDAGEINTGKARAELPGSGEESKVFLMEKTGKYQVIYTFGWYLRKFIMD
CCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHH
VQEKGAIPIVLSHTPRNKWKDGKIERNTASFGKWTREAAEATGAYFIDLNKISADKLEKK
HHHCCCEEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
GIKKAADYYNNDHTHTSLKGAHMNAKSIADGLKMADCPLKQYLK
HHHHHHHHCCCCCCCCEECCCCCCHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]