Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
---|---|
Accession | NC_004663 |
Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29349569
Identifier: 29349569
GI number: 29349569
Start: 5468555
End: 5469157
Strand: Reverse
Name: 29349569
Synonym: BT_4161
Alternate gene names: NA
Gene position: 5469157-5468555 (Counterclockwise)
Preceding gene: 29349581
Following gene: 29349565
Centisome position: 87.36
GC content: 45.61
Gene sequence:
>603_bases ATGGCAGCAGATTATGACTTTCGGCGAAAACCGAATGAAAAGGGAGACGGAGAAGTACAGCCTCTGTATCCCCGAATTGT ATCCAAAGGAACCATTGACAGCAAACGGTTATTTCGTGAAATAGCCGAAGCCTCTTCTTTCACCGAGGGAGATTTGGCAG GTATCATGGTAGCTTTTCAAGAGAAGGTATCCTATTATTTAAGTGAGGGGTATCATGTGAAACTGGGAGAAATCGGATAT TTCTCCTCTAGTTTGAAAGCACGTCCGGTGATGGACAAGAAAGAGATCCGTTCGGTCTCCATCTCTTTCGACAACGTAAA TTTCAGAGCTACTCCCTGGTTTCGCCGACGCAGTTCGGGGACGGTCACCCGTGCCAAATTCGGATTTCAAGAATCATCGA ACTTGCCGGAAGAGACACGCCGTTCCCGACTGGAAGCCTTTTTAGCAAAGAATCACTTCATCACTCGAAGAGAATACTCT CAGATTACGGGTTTATTGAAGGGAAAAGCACTACGGGAATTGAATCTTCTGGTAGAAAACGGAGTTCTTAACACTCGCGG ATATGGGAACCGGGTGGTGTATTTAAAGCCTAATAATCAGTAG
Upstream 100 bases:
>100_bases TCGAGCCTTGTCTACATGTTAAGGTTACTAGTGTTTGTACTAACACACGCGGTATCAATTGAGTAACAATCCTATTAACC AACAAAAAACAAGTGACGCT
Downstream 100 bases:
>100_bases ATTAAATCAGCAAAAGATACAATAAGGGTGATAATAGAAAAGAGGTTACTATTCTATTATCACCCTATTATCACCATCTA TTGTCACCCGTTTTTCATTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MAADYDFRRKPNEKGDGEVQPLYPRIVSKGTIDSKRLFREIAEASSFTEGDLAGIMVAFQEKVSYYLSEGYHVKLGEIGY FSSSLKARPVMDKKEIRSVSISFDNVNFRATPWFRRRSSGTVTRAKFGFQESSNLPEETRRSRLEAFLAKNHFITRREYS QITGLLKGKALRELNLLVENGVLNTRGYGNRVVYLKPNNQ
Sequences:
>Translated_200_residues MAADYDFRRKPNEKGDGEVQPLYPRIVSKGTIDSKRLFREIAEASSFTEGDLAGIMVAFQEKVSYYLSEGYHVKLGEIGY FSSSLKARPVMDKKEIRSVSISFDNVNFRATPWFRRRSSGTVTRAKFGFQESSNLPEETRRSRLEAFLAKNHFITRREYS QITGLLKGKALRELNLLVENGVLNTRGYGNRVVYLKPNNQ >Mature_199_residues AADYDFRRKPNEKGDGEVQPLYPRIVSKGTIDSKRLFREIAEASSFTEGDLAGIMVAFQEKVSYYLSEGYHVKLGEIGYF SSSLKARPVMDKKEIRSVSISFDNVNFRATPWFRRRSSGTVTRAKFGFQESSNLPEETRRSRLEAFLAKNHFITRREYSQ ITGLLKGKALRELNLLVENGVLNTRGYGNRVVYLKPNNQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22889; Mature: 22758
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAADYDFRRKPNEKGDGEVQPLYPRIVSKGTIDSKRLFREIAEASSFTEGDLAGIMVAFQ CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH EKVSYYLSEGYHVKLGEIGYFSSSLKARPVMDKKEIRSVSISFDNVNFRATPWFRRRSSG HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHEEEEEEECCCCEEECCCHHCCCCC TVTRAKFGFQESSNLPEETRRSRLEAFLAKNHFITRREYSQITGLLKGKALRELNLLVEN CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GVLNTRGYGNRVVYLKPNNQ CEECCCCCCCEEEEEECCCC >Mature Secondary Structure AADYDFRRKPNEKGDGEVQPLYPRIVSKGTIDSKRLFREIAEASSFTEGDLAGIMVAFQ CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH EKVSYYLSEGYHVKLGEIGYFSSSLKARPVMDKKEIRSVSISFDNVNFRATPWFRRRSSG HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHEEEEEEECCCCEEECCCHHCCCCC TVTRAKFGFQESSNLPEETRRSRLEAFLAKNHFITRREYSQITGLLKGKALRELNLLVEN CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GVLNTRGYGNRVVYLKPNNQ CEECCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA