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The map label for this gene is 29349554

Identifier: 29349554

GI number: 29349554

Start: 5444165

End: 5445568

Strand: Reverse

Name: 29349554

Synonym: BT_4146

Alternate gene names: NA

Gene position: 5445568-5444165 (Counterclockwise)

Preceding gene: 29349555

Following gene: 29349553

Centisome position: 86.98

GC content: 52.92

Gene sequence:

>1404_bases
ATGAAAAGAATATATCTACTACTCAGCCTACTGGCCGGTTGCCTGTTTATGCAGGCAGCAATCTATAACGTCAGAGATTT
CGGAGCAAAAGCAGACGGAAAGACGATTGATTCTCCCGCCATCAACCGTGCCATCGAAGCTGCCGCACAAGAAGGTGGAG
GTACCGTATACCTGCCTGCCGGAGAATATGCCTGTTATTCCATCCGGCTGAAAAGTAACATCCATCTCTATCTGGAACAA
GGCGCACGCATCATCGCCGCCTTTCCGGGAAAGGACGAAGGATACGACTCGGCGGAACCTAATGAGCATAATAAATACCA
GGACTTCGGGCACAGCCACTGGAAGAACTCCCTGATCTGGGGAATCGGTCTGGAAAACATCACCATCAGCGGTCCGGGAC
TGATCTACGGCAAAGGACTGACCCGCGAAGAAAGCCGCCTGCCGGGTGTAGGCAACAAAGCGATCAGCCTCAAGGATTGC
CGGAACGTCACGTTGAAAGACTTCTCCATGCTCCATTGCGGACACTTCGCCCTGCTTGCCACCGGTGTAGAGCACCTCAC
CCTGCTTAATCTGAAAGTAGATACCAACCGTGACGGATTCGACATTGACTGCTGCCGCAACGTACGCATCAGCCAATGCA
CGGTCAACTCCCCGTGGGATGACGCCATCGTTCTGAAAGCCTCCTATGCGCTGGGACGTTTCAAAGATACAGAGAACGTT
ACCATCAGCGACTGCTACGTCAGCGGCTTCGACAAGGGAAGCGTACTGGACGGCAGCTGGCAACTCGACGAACCACAGGC
CCCCGACCATGGATACCGTACCGGACGCATCAAGCTCGGAACGGAAAGCAGCGGAGGCTTCCGCAACATCGTCCTCACCA
ACTGTATCTTCGAACATTGTCGGGGACTGGCGCTCGAAACCGTAGACGGCGGCCATCTGGAAGACATCGTTATCAGCAAT
ATCACCATGAGGAATATCGTCAACGCTCCTATCTTCCTTCGCCTGGGTGCGCGCATGCGCAGTCCGGAAGGGACACCCAT
AGGCACCATGAAGCGTATTCTGATCAGCGACATCAATGTGTGGAACGCCGACAGCCGGTATTCTTCCATTATCAGCGGCG
TGCCCGGTGCATCTATCGAAGATGTTACTTTCCGCAACATTCATATATATTATAAAGGTGGATACAGCGAAGAAGACGGC
AAGCGCACTCCACCCGAACAGGAGAAAGTATATCCCGAACCCTGGATGTTCGGTACGATTCCCGCCAAAGGATTTTATAT
CCGCCACGCAAAGAACATAACTTTCGACGGTGTCCGTTTCCACTTTGCACAGCCGGACGGACGTCCGCTCTTTGTGACCG
ACGACGCAGAAAACATTGAATACTATCATACACCCCAAGAATAA

Upstream 100 bases:

>100_bases
GTAAAAAATGAATAAAACAGTAGTATCTCCATTCTCCTCCTTCGGGAAGGAGGAGATTTAAGATACTATTGATTATCATT
TAGCTTAAATCCATACAAAG

Downstream 100 bases:

>100_bases
TGAACAAGAAACAACTGATACTCCTCTGTATGCTCGCAGCAGGTGGAAGCATACAAGCGCAACAGTGGCCGGATGCTCCG
GCAGAAGCCCGTCCCGGCAC

Product: exo-poly-alpha-D-galacturonosidase

Products: NA

Alternate protein names: Glycoside Hydrolase Family Protein; Polygalacturonase; Exo-Poly-Alpha-D-Galacturonosidase; Galacturan 1 4-Alpha-Galacturonidase; Glycoside Hydrolase; Endopolygalacturonase; Polygalacturonase Family Protein; Pectin Lyase Fold Domain Protein Virulence Factor; Endo-Polygalacturonase; Polygalacturonase/Beta-Xylosidase; Endopygalactorunase; Pectate Lyase

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKRIYLLLSLLAGCLFMQAAIYNVRDFGAKADGKTIDSPAINRAIEAAAQEGGGTVYLPAGEYACYSIRLKSNIHLYLEQ
GARIIAAFPGKDEGYDSAEPNEHNKYQDFGHSHWKNSLIWGIGLENITISGPGLIYGKGLTREESRLPGVGNKAISLKDC
RNVTLKDFSMLHCGHFALLATGVEHLTLLNLKVDTNRDGFDIDCCRNVRISQCTVNSPWDDAIVLKASYALGRFKDTENV
TISDCYVSGFDKGSVLDGSWQLDEPQAPDHGYRTGRIKLGTESSGGFRNIVLTNCIFEHCRGLALETVDGGHLEDIVISN
ITMRNIVNAPIFLRLGARMRSPEGTPIGTMKRILISDINVWNADSRYSSIISGVPGASIEDVTFRNIHIYYKGGYSEEDG
KRTPPEQEKVYPEPWMFGTIPAKGFYIRHAKNITFDGVRFHFAQPDGRPLFVTDDAENIEYYHTPQE

Sequences:

>Translated_467_residues
MKRIYLLLSLLAGCLFMQAAIYNVRDFGAKADGKTIDSPAINRAIEAAAQEGGGTVYLPAGEYACYSIRLKSNIHLYLEQ
GARIIAAFPGKDEGYDSAEPNEHNKYQDFGHSHWKNSLIWGIGLENITISGPGLIYGKGLTREESRLPGVGNKAISLKDC
RNVTLKDFSMLHCGHFALLATGVEHLTLLNLKVDTNRDGFDIDCCRNVRISQCTVNSPWDDAIVLKASYALGRFKDTENV
TISDCYVSGFDKGSVLDGSWQLDEPQAPDHGYRTGRIKLGTESSGGFRNIVLTNCIFEHCRGLALETVDGGHLEDIVISN
ITMRNIVNAPIFLRLGARMRSPEGTPIGTMKRILISDINVWNADSRYSSIISGVPGASIEDVTFRNIHIYYKGGYSEEDG
KRTPPEQEKVYPEPWMFGTIPAKGFYIRHAKNITFDGVRFHFAQPDGRPLFVTDDAENIEYYHTPQE
>Mature_467_residues
MKRIYLLLSLLAGCLFMQAAIYNVRDFGAKADGKTIDSPAINRAIEAAAQEGGGTVYLPAGEYACYSIRLKSNIHLYLEQ
GARIIAAFPGKDEGYDSAEPNEHNKYQDFGHSHWKNSLIWGIGLENITISGPGLIYGKGLTREESRLPGVGNKAISLKDC
RNVTLKDFSMLHCGHFALLATGVEHLTLLNLKVDTNRDGFDIDCCRNVRISQCTVNSPWDDAIVLKASYALGRFKDTENV
TISDCYVSGFDKGSVLDGSWQLDEPQAPDHGYRTGRIKLGTESSGGFRNIVLTNCIFEHCRGLALETVDGGHLEDIVISN
ITMRNIVNAPIFLRLGARMRSPEGTPIGTMKRILISDINVWNADSRYSSIISGVPGASIEDVTFRNIHIYYKGGYSEEDG
KRTPPEQEKVYPEPWMFGTIPAKGFYIRHAKNITFDGVRFHFAQPDGRPLFVTDDAENIEYYHTPQE

Specific function: Unknown

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51845; Mature: 51845

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIYLLLSLLAGCLFMQAAIYNVRDFGAKADGKTIDSPAINRAIEAAAQEGGGTVYLPA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
GEYACYSIRLKSNIHLYLEQGARIIAAFPGKDEGYDSAEPNEHNKYQDFGHSHWKNSLIW
CCEEEEEEEEECCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHCCCEEE
GIGLENITISGPGLIYGKGLTREESRLPGVGNKAISLKDCRNVTLKDFSMLHCGHFALLA
EECCCEEEECCCCEEEECCCCCHHHCCCCCCCCEEEHHHHCCCCCHHHHHHHHCHHHHHH
TGVEHLTLLNLKVDTNRDGFDIDCCRNVRISQCTVNSPWDDAIVLKASYALGRFKDTENV
HCCCEEEEEEEEEECCCCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEHHHCCCCCCCCE
TISDCYVSGFDKGSVLDGSWQLDEPQAPDHGYRTGRIKLGTESSGGFRNIVLTNCIFEHC
EEEEEEEECCCCCCEECCCCCCCCCCCCCCCCEECEEEECCCCCCCEEHHHHHHHHHHHH
RGLALETVDGGHLEDIVISNITMRNIVNAPIFLRLGARMRSPEGTPIGTMKRILISDINV
CCCEEEECCCCCCCCEEECCEEHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
WNADSRYSSIISGVPGASIEDVTFRNIHIYYKGGYSEEDGKRTPPEQEKVYPEPWMFGTI
CCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCEEECC
PAKGFYIRHAKNITFDGVRFHFAQPDGRPLFVTDDAENIEYYHTPQE
CCCCEEEEEECCCEECCEEEEEECCCCCEEEEECCCCCCEEEECCCC
>Mature Secondary Structure
MKRIYLLLSLLAGCLFMQAAIYNVRDFGAKADGKTIDSPAINRAIEAAAQEGGGTVYLPA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
GEYACYSIRLKSNIHLYLEQGARIIAAFPGKDEGYDSAEPNEHNKYQDFGHSHWKNSLIW
CCEEEEEEEEECCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHCCCEEE
GIGLENITISGPGLIYGKGLTREESRLPGVGNKAISLKDCRNVTLKDFSMLHCGHFALLA
EECCCEEEECCCCEEEECCCCCHHHCCCCCCCCEEEHHHHCCCCCHHHHHHHHCHHHHHH
TGVEHLTLLNLKVDTNRDGFDIDCCRNVRISQCTVNSPWDDAIVLKASYALGRFKDTENV
HCCCEEEEEEEEEECCCCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEHHHCCCCCCCCE
TISDCYVSGFDKGSVLDGSWQLDEPQAPDHGYRTGRIKLGTESSGGFRNIVLTNCIFEHC
EEEEEEEECCCCCCEECCCCCCCCCCCCCCCCEECEEEECCCCCCCEEHHHHHHHHHHHH
RGLALETVDGGHLEDIVISNITMRNIVNAPIFLRLGARMRSPEGTPIGTMKRILISDINV
CCCEEEECCCCCCCCEEECCEEHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
WNADSRYSSIISGVPGASIEDVTFRNIHIYYKGGYSEEDGKRTPPEQEKVYPEPWMFGTI
CCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCEEECC
PAKGFYIRHAKNITFDGVRFHFAQPDGRPLFVTDDAENIEYYHTPQE
CCCCEEEEEECCCEECCEEEEEECCCCCEEEEECCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA