| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349553
Identifier: 29349553
GI number: 29349553
Start: 5441391
End: 5444165
Strand: Reverse
Name: 29349553
Synonym: BT_4145
Alternate gene names: NA
Gene position: 5444165-5441391 (Counterclockwise)
Preceding gene: 29349554
Following gene: 29349552
Centisome position: 86.96
GC content: 49.87
Gene sequence:
>2775_bases ATGAACAAGAAACAACTGATACTCCTCTGTATGCTCGCAGCAGGTGGAAGCATACAAGCGCAACAGTGGCCGGATGCTCC GGCAGAAGCCCGTCCCGGCACCAGATGGTGGTGGCTGGGAAGCGCTGTCGATGAAAAGAACCTGACTTACAATCTGGAAG AATACGCACGTGCCGGCATGGGCGCCGTAGAAATCACTCCCATCTATGGTGTACAGGGCAATGACGCCAACGATATTCAG TTCCTTTCTCCCCGCTGGATGGAAGTCCTCAAACACACACAGGCGGAAGGAAAACGCACCGGCATCGAGATCGATATGAA CACCGGAACGGGATGGCCCTTCGGAGGACCGGAAGTCAGCATCGAAGACGCGGCAAGCAAAGCCATCTTCCAGACTTATG ATATAGAAGGAGGCCAGGAAATCGTGCAAGATATCAATGTGACAGACAAGAAGCAACAACCTTATTCTGTCTTAAGCCGC GTAATGGCATACGACGAAAACGGACGCTGCATCAACCTTACTTCCCATGTCAGGAAAGACAAACTGGTATGGAAAGCCCC TGCCGGAAAATGGAAAGTGATAGCGCTGTATAACAGCAAGACACGTCAGAAAGTGAAACGTGCCGCCCCCGGAGGGGAAG GATACGTAATGAACCATCTTTCCAAGACTGCCGTCAAGAACTATCTCTCCCGATTTAACCGTGCTTTCAAAAGTAGTAAG ACGAGTTATCCGCATACATTCTTCAACGACTCTTACGAAGTCTATCAGGCAGACTGGACAGAAGACTTTCTGGATCAGTT CGCCCGCAGACGGGGATATAAACTGGAAGAACATTTTCCGGAGTTTCTGGATGAAAACCGTCCGGAAATCAGCCGCCGCA TCGTATCCGACTATCGGGAGACGATCTCCGACTTATTGCTGGAGAACTTCACCCGCCAATGGACGGACTGGGCACACAAG AATGGCAGCATCACCCGTAATCAGGCACACGGATCGCCTGCCAACCTGATCGATGTCTACGCAGCCGTAGACATCCCCGA ATGTGAAGGATTCGGTTTGTCCCAATTTCATATCAAAGGATTACGTCAGGATTCATTAACCAAAAAGAATGATTCAGACT TGTCGATGCTGAAATATGCCTCTTCTGCCGCCCATATCGCCGGGAAACCTTATACTTCTACCGAAACATTTACCTGGCTG ACGGAGCATTTCCGCACTTCTTTATCGCAATGCAAACCGGATATGGACCTGATGTTCGTCTCCGGCATTAATCATATGTT CTTTCACGGCACTCCTTATTCGCCGAAAGAAGCCGAATGGCCGGGATGGTTGTTTTACGCCTCTATCAATATGAACCCGA CGAACAGTATCTGGCACGATGCCCCTTCGTTCTTCGATTATATCACCCGTTGCCAGAGTTTCCTGCAAATGGGTAAACCG GATAATGATTTCCTTATTTATCTGCCTGTCTATGATATGTGGGATGAGCAACCGGGACGTTTGCTGCTATTCAGCATTCA TCACATGGCCAAGCTCGCCCCGAAATTTATAGATGCCATCCACCGTATCAATAACAGCGGATATGACGGAGACTATATCT CGGACAACTTTATCCGCAGCACCCGTTTCAAAGACGGGCAGTTAATCACTTCCGGCGGAACCGGTTACAAAGCACTGGTC GTACCCGCCGCCCATTTAATGCCGAATGACGTTCTGGCTCATCTGCTGAAACTGGCACAACAGGGAGCCACGATCGTATT CCTCGAAAACTATCCGACGGACGTACCGGGATACGGTCAACTGGAACAGAAGCGCAAGACTTATCAGCAGACGCTGCAAA AGTTACCTTCCGTTTCATTCTCCGAAACAACGGTTACTCCGGTAGGCAAAGGTAAGATTATTACAGGTACGGATTATGCA CGTACTTTGGCAAGTTGTAATATTCCTCAGGAAGAAATGAAAACCAAGTTCGGACTGCAAGCCATCCGCAGAGTGAACGA TAGCGGGCACCATTACTTTATCTCTTCTCTCCAAGATAAAGGAGTGAATGATTGGGTGACACTGGGAACCAAAGCCAAAG CTGCCGCCCTCTTCAATCCCATGACAGGCGAATGCGGAGAAGCAAAGGTACGCCAGGCCGGAGAACAGACACAAGTCTAC CTCCAACTGAAATCCGGCGAATCGGTGATTTTGCAGACTTATCAACAGCCGCTGCAAGCTGCCCGCCCCTGGAAATATAT TCAGGAACAACCGTTCAGCCTCAGCCTGGATCATGGCTGGAAACTACACTTCGCCGAAAGCGAACCGAAGATAAAGGGTA CGTTTGACATCGACCGCCCTTGCTCATGGACAGGCATCGACCATCCGGCAGCCAAGATTAACATGGGCAGCGGTGTTTAT TCATTGGATATCGAATTGCCCGCTCTGCAAGCCGATGACTGGGTACTCGACTTGGGAGACGTACGCGAAAGTGCCCGTGT CCGGATCAACGGGCAGGAAGCGGGCTGCGCATGGGCAGTACCTTACCAGCTACGAGTAGGTCATCTGCTGAAATCAGGAA AAAACCACATCGAGATAGAAGTCACTAACCTCCCTGCCAACCGGATATCTGAACTGGACAGGCAGGGAGTGCAGTGGCGC AAATTTAAAGAGATCAATATTGTCGATCTGAATTATCGTCCAGCCAACTATGGTCACTGGGCTCCCATGCCTTCGGGATT AAATAGCGAGGTCCGGCTGATTCCGGTAGATTATTTATCTTTCAAGACACACTAA
Upstream 100 bases:
>100_bases TCGACGGTGTCCGTTTCCACTTTGCACAGCCGGACGGACGTCCGCTCTTTGTGACCGACGACGCAGAAAACATTGAATAC TATCATACACCCCAAGAATA
Downstream 100 bases:
>100_bases AGTTATTATTTAAATCTACTTTCAGTTCAAGATAAGGCAATATAGTTCGGGCCTGACTAAAAAGTCAGTAGTATCTCCAA TTCCCCTCCTTCGGGAAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 924; Mature: 924
Protein sequence:
>924_residues MNKKQLILLCMLAAGGSIQAQQWPDAPAEARPGTRWWWLGSAVDEKNLTYNLEEYARAGMGAVEITPIYGVQGNDANDIQ FLSPRWMEVLKHTQAEGKRTGIEIDMNTGTGWPFGGPEVSIEDAASKAIFQTYDIEGGQEIVQDINVTDKKQQPYSVLSR VMAYDENGRCINLTSHVRKDKLVWKAPAGKWKVIALYNSKTRQKVKRAAPGGEGYVMNHLSKTAVKNYLSRFNRAFKSSK TSYPHTFFNDSYEVYQADWTEDFLDQFARRRGYKLEEHFPEFLDENRPEISRRIVSDYRETISDLLLENFTRQWTDWAHK NGSITRNQAHGSPANLIDVYAAVDIPECEGFGLSQFHIKGLRQDSLTKKNDSDLSMLKYASSAAHIAGKPYTSTETFTWL TEHFRTSLSQCKPDMDLMFVSGINHMFFHGTPYSPKEAEWPGWLFYASINMNPTNSIWHDAPSFFDYITRCQSFLQMGKP DNDFLIYLPVYDMWDEQPGRLLLFSIHHMAKLAPKFIDAIHRINNSGYDGDYISDNFIRSTRFKDGQLITSGGTGYKALV VPAAHLMPNDVLAHLLKLAQQGATIVFLENYPTDVPGYGQLEQKRKTYQQTLQKLPSVSFSETTVTPVGKGKIITGTDYA RTLASCNIPQEEMKTKFGLQAIRRVNDSGHHYFISSLQDKGVNDWVTLGTKAKAAALFNPMTGECGEAKVRQAGEQTQVY LQLKSGESVILQTYQQPLQAARPWKYIQEQPFSLSLDHGWKLHFAESEPKIKGTFDIDRPCSWTGIDHPAAKINMGSGVY SLDIELPALQADDWVLDLGDVRESARVRINGQEAGCAWAVPYQLRVGHLLKSGKNHIEIEVTNLPANRISELDRQGVQWR KFKEINIVDLNYRPANYGHWAPMPSGLNSEVRLIPVDYLSFKTH
Sequences:
>Translated_924_residues MNKKQLILLCMLAAGGSIQAQQWPDAPAEARPGTRWWWLGSAVDEKNLTYNLEEYARAGMGAVEITPIYGVQGNDANDIQ FLSPRWMEVLKHTQAEGKRTGIEIDMNTGTGWPFGGPEVSIEDAASKAIFQTYDIEGGQEIVQDINVTDKKQQPYSVLSR VMAYDENGRCINLTSHVRKDKLVWKAPAGKWKVIALYNSKTRQKVKRAAPGGEGYVMNHLSKTAVKNYLSRFNRAFKSSK TSYPHTFFNDSYEVYQADWTEDFLDQFARRRGYKLEEHFPEFLDENRPEISRRIVSDYRETISDLLLENFTRQWTDWAHK NGSITRNQAHGSPANLIDVYAAVDIPECEGFGLSQFHIKGLRQDSLTKKNDSDLSMLKYASSAAHIAGKPYTSTETFTWL TEHFRTSLSQCKPDMDLMFVSGINHMFFHGTPYSPKEAEWPGWLFYASINMNPTNSIWHDAPSFFDYITRCQSFLQMGKP DNDFLIYLPVYDMWDEQPGRLLLFSIHHMAKLAPKFIDAIHRINNSGYDGDYISDNFIRSTRFKDGQLITSGGTGYKALV VPAAHLMPNDVLAHLLKLAQQGATIVFLENYPTDVPGYGQLEQKRKTYQQTLQKLPSVSFSETTVTPVGKGKIITGTDYA RTLASCNIPQEEMKTKFGLQAIRRVNDSGHHYFISSLQDKGVNDWVTLGTKAKAAALFNPMTGECGEAKVRQAGEQTQVY LQLKSGESVILQTYQQPLQAARPWKYIQEQPFSLSLDHGWKLHFAESEPKIKGTFDIDRPCSWTGIDHPAAKINMGSGVY SLDIELPALQADDWVLDLGDVRESARVRINGQEAGCAWAVPYQLRVGHLLKSGKNHIEIEVTNLPANRISELDRQGVQWR KFKEINIVDLNYRPANYGHWAPMPSGLNSEVRLIPVDYLSFKTH >Mature_924_residues MNKKQLILLCMLAAGGSIQAQQWPDAPAEARPGTRWWWLGSAVDEKNLTYNLEEYARAGMGAVEITPIYGVQGNDANDIQ FLSPRWMEVLKHTQAEGKRTGIEIDMNTGTGWPFGGPEVSIEDAASKAIFQTYDIEGGQEIVQDINVTDKKQQPYSVLSR VMAYDENGRCINLTSHVRKDKLVWKAPAGKWKVIALYNSKTRQKVKRAAPGGEGYVMNHLSKTAVKNYLSRFNRAFKSSK TSYPHTFFNDSYEVYQADWTEDFLDQFARRRGYKLEEHFPEFLDENRPEISRRIVSDYRETISDLLLENFTRQWTDWAHK NGSITRNQAHGSPANLIDVYAAVDIPECEGFGLSQFHIKGLRQDSLTKKNDSDLSMLKYASSAAHIAGKPYTSTETFTWL TEHFRTSLSQCKPDMDLMFVSGINHMFFHGTPYSPKEAEWPGWLFYASINMNPTNSIWHDAPSFFDYITRCQSFLQMGKP DNDFLIYLPVYDMWDEQPGRLLLFSIHHMAKLAPKFIDAIHRINNSGYDGDYISDNFIRSTRFKDGQLITSGGTGYKALV VPAAHLMPNDVLAHLLKLAQQGATIVFLENYPTDVPGYGQLEQKRKTYQQTLQKLPSVSFSETTVTPVGKGKIITGTDYA RTLASCNIPQEEMKTKFGLQAIRRVNDSGHHYFISSLQDKGVNDWVTLGTKAKAAALFNPMTGECGEAKVRQAGEQTQVY LQLKSGESVILQTYQQPLQAARPWKYIQEQPFSLSLDHGWKLHFAESEPKIKGTFDIDRPCSWTGIDHPAAKINMGSGVY SLDIELPALQADDWVLDLGDVRESARVRINGQEAGCAWAVPYQLRVGHLLKSGKNHIEIEVTNLPANRISELDRQGVQWR KFKEINIVDLNYRPANYGHWAPMPSGLNSEVRLIPVDYLSFKTH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104646; Mature: 104646
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKQLILLCMLAAGGSIQAQQWPDAPAEARPGTRWWWLGSAVDEKNLTYNLEEYARAGM CCCCEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEECHHHHHHCCC GAVEITPIYGVQGNDANDIQFLSPRWMEVLKHTQAEGKRTGIEIDMNTGTGWPFGGPEVS CEEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEE IEDAASKAIFQTYDIEGGQEIVQDINVTDKKQQPYSVLSRVMAYDENGRCINLTSHVRKD HHHHHHHHHEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEHHHHHCCC KLVWKAPAGKWKVIALYNSKTRQKVKRAAPGGEGYVMNHLSKTAVKNYLSRFNRAFKSSK CEEEECCCCCEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC TSYPHTFFNDSYEVYQADWTEDFLDQFARRRGYKLEEHFPEFLDENRPEISRRIVSDYRE CCCCCCEECCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH TISDLLLENFTRQWTDWAHKNGSITRNQAHGSPANLIDVYAAVDIPECEGFGLSQFHIKG HHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHCC LRQDSLTKKNDSDLSMLKYASSAAHIAGKPYTSTETFTWLTEHFRTSLSQCKPDMDLMFV CCHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE SGINHMFFHGTPYSPKEAEWPGWLFYASINMNPTNSIWHDAPSFFDYITRCQSFLQMGKP CCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHCCCC DNDFLIYLPVYDMWDEQPGRLLLFSIHHMAKLAPKFIDAIHRINNSGYDGDYISDNFIRS CCCEEEEEECHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH TRFKDGQLITSGGTGYKALVVPAAHLMPNDVLAHLLKLAQQGATIVFLENYPTDVPGYGQ CCCCCCEEEECCCCCEEEEEECHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC LEQKRKTYQQTLQKLPSVSFSETTVTPVGKGKIITGTDYARTLASCNIPQEEMKTKFGLQ HHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHH AIRRVNDSGHHYFISSLQDKGVNDWVTLGTKAKAAALFNPMTGECGEAKVRQAGEQTQVY HHHHHCCCCCEEEEECCCCCCCCCEEEECCCHHHHHHCCCCCCCCCHHHHHHCCCCEEEE LQLKSGESVILQTYQQPLQAARPWKYIQEQPFSLSLDHGWKLHFAESEPKIKGTFDIDRP EEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCEEEEEECCCCCEEEEECCCCC CSWTGIDHPAAKINMGSGVYSLDIELPALQADDWVLDLGDVRESARVRINGQEAGCAWAV CCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCEEEEHHHCCCCCEEEECCCCCCEEEEC PYQLRVGHLLKSGKNHIEIEVTNLPANRISELDRQGVQWRKFKEINIVDLNYRPANYGHW CHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEEECEEEEEEECCCCCCCCCC APMPSGLNSEVRLIPVDYLSFKTH CCCCCCCCCCEEEEEEEHCCCCCC >Mature Secondary Structure MNKKQLILLCMLAAGGSIQAQQWPDAPAEARPGTRWWWLGSAVDEKNLTYNLEEYARAGM CCCCEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEECHHHHHHCCC GAVEITPIYGVQGNDANDIQFLSPRWMEVLKHTQAEGKRTGIEIDMNTGTGWPFGGPEVS CEEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEE IEDAASKAIFQTYDIEGGQEIVQDINVTDKKQQPYSVLSRVMAYDENGRCINLTSHVRKD HHHHHHHHHEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEHHHHHCCC KLVWKAPAGKWKVIALYNSKTRQKVKRAAPGGEGYVMNHLSKTAVKNYLSRFNRAFKSSK CEEEECCCCCEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC TSYPHTFFNDSYEVYQADWTEDFLDQFARRRGYKLEEHFPEFLDENRPEISRRIVSDYRE CCCCCCEECCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH TISDLLLENFTRQWTDWAHKNGSITRNQAHGSPANLIDVYAAVDIPECEGFGLSQFHIKG HHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHCC LRQDSLTKKNDSDLSMLKYASSAAHIAGKPYTSTETFTWLTEHFRTSLSQCKPDMDLMFV CCHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE SGINHMFFHGTPYSPKEAEWPGWLFYASINMNPTNSIWHDAPSFFDYITRCQSFLQMGKP CCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHCCCC DNDFLIYLPVYDMWDEQPGRLLLFSIHHMAKLAPKFIDAIHRINNSGYDGDYISDNFIRS CCCEEEEEECHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH TRFKDGQLITSGGTGYKALVVPAAHLMPNDVLAHLLKLAQQGATIVFLENYPTDVPGYGQ CCCCCCEEEECCCCCEEEEEECHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC LEQKRKTYQQTLQKLPSVSFSETTVTPVGKGKIITGTDYARTLASCNIPQEEMKTKFGLQ HHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHH AIRRVNDSGHHYFISSLQDKGVNDWVTLGTKAKAAALFNPMTGECGEAKVRQAGEQTQVY HHHHHCCCCCEEEEECCCCCCCCCEEEECCCHHHHHHCCCCCCCCCHHHHHHCCCCEEEE LQLKSGESVILQTYQQPLQAARPWKYIQEQPFSLSLDHGWKLHFAESEPKIKGTFDIDRP EEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCEEEEEECCCCCEEEEECCCCC CSWTGIDHPAAKINMGSGVYSLDIELPALQADDWVLDLGDVRESARVRINGQEAGCAWAV CCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCEEEEHHHCCCCCEEEECCCCCCEEEEC PYQLRVGHLLKSGKNHIEIEVTNLPANRISELDRQGVQWRKFKEINIVDLNYRPANYGHW CHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEEECEEEEEEECCCCCCCCCC APMPSGLNSEVRLIPVDYLSFKTH CCCCCCCCCCEEEEEEEHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA