| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349555
Identifier: 29349555
GI number: 29349555
Start: 5445658
End: 5446248
Strand: Reverse
Name: 29349555
Synonym: BT_4147
Alternate gene names: NA
Gene position: 5446248-5445658 (Counterclockwise)
Preceding gene: 29349556
Following gene: 29349554
Centisome position: 87.0
GC content: 48.56
Gene sequence:
>591_bases ATGTTAAAACAACTACTGACCGTCGTACTGCTGGCAATCTGCCTCATTAACGTACAGGCGCAGCAACTGACTCCTCCCGC CGGAACTTTCCGTCTGGGTATATCGAAAGGAACCGACAGTCATTGGCTGGCTCCTCAGGAAAAAGTGAAAGGAATCGCTT TCCGGTGGAAAGCCCTGCCGGATACCCGCGGCTTTATTCTCGAAGTAGCGGTCACCTCCTTGCAGCAGGCCGATACCTTA TTCTGGAGCTTCGGAAACTGTCAGCCGGACATGGATATAAACGTGTTCAGTGTAGAAGGGCAAGCCTTCACCTGTTATTA TGGTGAAAGTATGAAACTCCGCACCTTGCAGGCGGTCACTCCCACTGACGATATCCGTTTGAGTAACGGCCGTCAGGACA AGACTCCCCTCTTGCTTTATGAATCGGGGAAACGAACAGACCGTCCTGTCCTCGCAGGGCGCTGCCCGCTCGCAGCAAAC AGTAAACTTTATTTCTGTTTCTACGAGCAAAATGCACGAGCAGATTATAATTATTTTATGTTGCCGGATCTTTTTGCAAA GATTGATGAATCTAAACATAGTAAAAAATGA
Upstream 100 bases:
>100_bases TATACGAGAAACTTTAATCTATCGGAAATAACATTGGACGTCAAAGACAAAGATGCTATTGTATTAAAGGAAAATGAACA AAGTAATATCCACTTCGACT
Downstream 100 bases:
>100_bases ATAAAACAGTAGTATCTCCATTCTCCTCCTTCGGGAAGGAGGAGATTTAAGATACTATTGATTATCATTTAGCTTAAATC CATACAAAGATGAAAAGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MLKQLLTVVLLAICLINVQAQQLTPPAGTFRLGISKGTDSHWLAPQEKVKGIAFRWKALPDTRGFILEVAVTSLQQADTL FWSFGNCQPDMDINVFSVEGQAFTCYYGESMKLRTLQAVTPTDDIRLSNGRQDKTPLLLYESGKRTDRPVLAGRCPLAAN SKLYFCFYEQNARADYNYFMLPDLFAKIDESKHSKK
Sequences:
>Translated_196_residues MLKQLLTVVLLAICLINVQAQQLTPPAGTFRLGISKGTDSHWLAPQEKVKGIAFRWKALPDTRGFILEVAVTSLQQADTL FWSFGNCQPDMDINVFSVEGQAFTCYYGESMKLRTLQAVTPTDDIRLSNGRQDKTPLLLYESGKRTDRPVLAGRCPLAAN SKLYFCFYEQNARADYNYFMLPDLFAKIDESKHSKK >Mature_196_residues MLKQLLTVVLLAICLINVQAQQLTPPAGTFRLGISKGTDSHWLAPQEKVKGIAFRWKALPDTRGFILEVAVTSLQQADTL FWSFGNCQPDMDINVFSVEGQAFTCYYGESMKLRTLQAVTPTDDIRLSNGRQDKTPLLLYESGKRTDRPVLAGRCPLAAN SKLYFCFYEQNARADYNYFMLPDLFAKIDESKHSKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22123; Mature: 22123
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKQLLTVVLLAICLINVQAQQLTPPAGTFRLGISKGTDSHWLAPQEKVKGIAFRWKALP CHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHCCEEEEEEECC DTRGFILEVAVTSLQQADTLFWSFGNCQPDMDINVFSVEGQAFTCYYGESMKLRTLQAVT CCCCEEEEEHHHHHHHHHEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEEEEC PTDDIRLSNGRQDKTPLLLYESGKRTDRPVLAGRCPLAANSKLYFCFYEQNARADYNYFM CCCCEEECCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCEEE LPDLFAKIDESKHSKK CHHHHHHHCCCCCCCC >Mature Secondary Structure MLKQLLTVVLLAICLINVQAQQLTPPAGTFRLGISKGTDSHWLAPQEKVKGIAFRWKALP CHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHCCEEEEEEECC DTRGFILEVAVTSLQQADTLFWSFGNCQPDMDINVFSVEGQAFTCYYGESMKLRTLQAVT CCCCEEEEEHHHHHHHHHEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEEEEC PTDDIRLSNGRQDKTPLLLYESGKRTDRPVLAGRCPLAANSKLYFCFYEQNARADYNYFM CCCCEEECCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCEEE LPDLFAKIDESKHSKK CHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA