| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349454
Identifier: 29349454
GI number: 29349454
Start: 5263331
End: 5264887
Strand: Reverse
Name: 29349454
Synonym: BT_4046
Alternate gene names: NA
Gene position: 5264887-5263331 (Counterclockwise)
Preceding gene: 29349459
Following gene: 29349451
Centisome position: 84.1
GC content: 38.92
Gene sequence:
>1557_bases ATGGACGAGAGACTCAGACGATACCCGATAGGAATACAGAATTTCGAAGATTTGCGAAATAATGGTTATGTGTACGTTGA TAAAACGGAGTTAATTTACCGTTTGACAAACACAAATAAGGTTTATTTTTTAAGCCGTCCCCGACGATTCGGGAAAAGTC TGCTAGTATCTACACTCGAAGCTTATTTTTCCGGAAAGAAAGACTTGTTCAACGGATTGGCAATGGAAACTCTGGAAAAA GAATGGGCTGTTTATCCGGTGCTACATATTGATTTCAGTGTGAGTAAATATATGACTGCCGAAGCGTTATCAGCCGTCAT TAATTACCAGTTACTGCAATGGGAAAAATTATATGGACGCGAAGAAGGAGAAACGACTTTCAGCCTTCGTTTAAAGGGAA TCATACAACGCGCATATACACAGACCGGCAAACCAGTTGTGATACTTGTAGATGAATATGATGCTCCCATGCTGGACAGT AATAACAATACGGAATTGCAAATAGAAATTCGTGATATTATGCGCGATTTCTTCAGCCCTTTGAAAGCGCAAGGCCAATA TATCCGTTTCCTTTTTATCACAGGTATCAGCAAATTCAGTCAAATGAGTATCTTTAGCGAACTGAACAACTTGCAAAATA TCAGTATGTGGGATGAATATAGCGCTATATGCGGCATTACCGAACAAGAGGTACACACACTGCAAATCGATATCGAACAG ATGGCTCAAGCCAATAACGAAACATATGAAGAAGCTTGTACTCATCTGAAACAACAATATGACGGATATCATTTTAGTGA AAATAGCGAGGATATTTATAATCCATTCAGTCTGTTCAATGCTTTCGCACAAAAAAAGTATTCCAATTTTTGGTTTTCTA CCGGTACTCCCACTTTTTTGATAGATCTCCTACAAGAAAGTAACTTTGATATCCGTGAGTTGGATGACACTACTGCTACA GCAGAACAATTTGATGCTCCCACTAATAGAATTACCGACCCTCTTCCAGTACTTTATCAAAGCGGCTATCTCACTATTAA AGGATATGACCCGAGTTTTCAGCTCTATACCCTAGCTTACCCCAACAAGGAAGTCAGGAAAGGATTTCTCGAATCTCTCA TGCCTGCTTATGTACATTTGCCCGCACGAGAGAATACATTTTATATAGTATCATTTATTAAAGACTTACGTGCCGGAAAT TTGGATGGATGCCTGGAAAGACTAAAGTCCTTCTTCGCTTCTATCCCTAATAAGTTAAATAATAAAGAAGAGAAACATTA CCAAACCATCTTCTATCTATTTTTCAGGCTGATGGGGCAATATATAGATGTGGAAGTAGATACAGCTATCGGAAGGGCTG ACGCCATTGTAAAATTACAAGATACCCTTTATGTCTTTGAATTTAAAGTGGACGGTACACCGGAAGAAGCATTGGCGCAG ATTAATAGTAAGGAGTATGCCATTCCCTATCAGGTGGGAGACTGGAAAATAATAAAAGTGGGGGTAAACTTTGATAGTGC GACAAGAACTATCGGAACATGGAAAACAGAAAGATAA
Upstream 100 bases:
>100_bases AAAATAAAAATGGAAGAAAACAACAATATACTTTTTGATCTTTGATTTTCCCCTATTTAGTTCTATCTTTGTCTATGTTT CATATAAAAATGTAATTTAG
Downstream 100 bases:
>100_bases AGAACGCGGATTAACCACTATACAGCCTAAATGACAGAATAAAAAGTGGGGATAACGTTTTCAATAACGCATCCCCACTC AAGCTTAGTTAATGTACTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 518
Protein sequence:
>518_residues MDERLRRYPIGIQNFEDLRNNGYVYVDKTELIYRLTNTNKVYFLSRPRRFGKSLLVSTLEAYFSGKKDLFNGLAMETLEK EWAVYPVLHIDFSVSKYMTAEALSAVINYQLLQWEKLYGREEGETTFSLRLKGIIQRAYTQTGKPVVILVDEYDAPMLDS NNNTELQIEIRDIMRDFFSPLKAQGQYIRFLFITGISKFSQMSIFSELNNLQNISMWDEYSAICGITEQEVHTLQIDIEQ MAQANNETYEEACTHLKQQYDGYHFSENSEDIYNPFSLFNAFAQKKYSNFWFSTGTPTFLIDLLQESNFDIRELDDTTAT AEQFDAPTNRITDPLPVLYQSGYLTIKGYDPSFQLYTLAYPNKEVRKGFLESLMPAYVHLPARENTFYIVSFIKDLRAGN LDGCLERLKSFFASIPNKLNNKEEKHYQTIFYLFFRLMGQYIDVEVDTAIGRADAIVKLQDTLYVFEFKVDGTPEEALAQ INSKEYAIPYQVGDWKIIKVGVNFDSATRTIGTWKTER
Sequences:
>Translated_518_residues MDERLRRYPIGIQNFEDLRNNGYVYVDKTELIYRLTNTNKVYFLSRPRRFGKSLLVSTLEAYFSGKKDLFNGLAMETLEK EWAVYPVLHIDFSVSKYMTAEALSAVINYQLLQWEKLYGREEGETTFSLRLKGIIQRAYTQTGKPVVILVDEYDAPMLDS NNNTELQIEIRDIMRDFFSPLKAQGQYIRFLFITGISKFSQMSIFSELNNLQNISMWDEYSAICGITEQEVHTLQIDIEQ MAQANNETYEEACTHLKQQYDGYHFSENSEDIYNPFSLFNAFAQKKYSNFWFSTGTPTFLIDLLQESNFDIRELDDTTAT AEQFDAPTNRITDPLPVLYQSGYLTIKGYDPSFQLYTLAYPNKEVRKGFLESLMPAYVHLPARENTFYIVSFIKDLRAGN LDGCLERLKSFFASIPNKLNNKEEKHYQTIFYLFFRLMGQYIDVEVDTAIGRADAIVKLQDTLYVFEFKVDGTPEEALAQ INSKEYAIPYQVGDWKIIKVGVNFDSATRTIGTWKTER >Mature_518_residues MDERLRRYPIGIQNFEDLRNNGYVYVDKTELIYRLTNTNKVYFLSRPRRFGKSLLVSTLEAYFSGKKDLFNGLAMETLEK EWAVYPVLHIDFSVSKYMTAEALSAVINYQLLQWEKLYGREEGETTFSLRLKGIIQRAYTQTGKPVVILVDEYDAPMLDS NNNTELQIEIRDIMRDFFSPLKAQGQYIRFLFITGISKFSQMSIFSELNNLQNISMWDEYSAICGITEQEVHTLQIDIEQ MAQANNETYEEACTHLKQQYDGYHFSENSEDIYNPFSLFNAFAQKKYSNFWFSTGTPTFLIDLLQESNFDIRELDDTTAT AEQFDAPTNRITDPLPVLYQSGYLTIKGYDPSFQLYTLAYPNKEVRKGFLESLMPAYVHLPARENTFYIVSFIKDLRAGN LDGCLERLKSFFASIPNKLNNKEEKHYQTIFYLFFRLMGQYIDVEVDTAIGRADAIVKLQDTLYVFEFKVDGTPEEALAQ INSKEYAIPYQVGDWKIIKVGVNFDSATRTIGTWKTER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018631 - InterPro: IPR012547 [H]
Pfam domain/function: PF09820 AAA-ATPase_like; PF08011 DUF1703 [H]
EC number: NA
Molecular weight: Translated: 60211; Mature: 60211
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDERLRRYPIGIQNFEDLRNNGYVYVDKTELIYRLTNTNKVYFLSRPRRFGKSLLVSTLE CCCCHHHCCCCCCCHHHHCCCCEEEEECCEEEEEEECCCEEEEECCCHHHHHHHHHHHHH AYFSGKKDLFNGLAMETLEKEWAVYPVLHIDFSVSKYMTAEALSAVINYQLLQWEKLYGR HHHCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC EEGETTFSLRLKGIIQRAYTQTGKPVVILVDEYDAPMLDSNNNTELQIEIRDIMRDFFSP CCCCEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHH LKAQGQYIRFLFITGISKFSQMSIFSELNNLQNISMWDEYSAICGITEQEVHTLQIDIEQ HHCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHCEEEEEEEHHH MAQANNETYEEACTHLKQQYDGYHFSENSEDIYNPFSLFNAFAQKKYSNFWFSTGTPTFL HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCEEECCCHHHH IDLLQESNFDIRELDDTTATAEQFDAPTNRITDPLPVLYQSGYLTIKGYDPSFQLYTLAY HHHHHHCCCCCEECCCCHHHHHHCCCCHHHCCCCCHHHCCCCEEEEEECCCCEEEEEEEC PNKEVRKGFLESLMPAYVHLPARENTFYIVSFIKDLRAGNLDGCLERLKSFFASIPNKLN CCHHHHHHHHHHHHHHHEECCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHCC NKEEKHYQTIFYLFFRLMGQYIDVEVDTAIGRADAIVKLQDTLYVFEFKVDGTPEEALAQ CCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEECEEEEEEEEECCCHHHHHHH INSKEYAIPYQVGDWKIIKVGVNFDSATRTIGTWKTER CCCCCEEEEEEECCEEEEEEEECCCCCCCEECCCCCCC >Mature Secondary Structure MDERLRRYPIGIQNFEDLRNNGYVYVDKTELIYRLTNTNKVYFLSRPRRFGKSLLVSTLE CCCCHHHCCCCCCCHHHHCCCCEEEEECCEEEEEEECCCEEEEECCCHHHHHHHHHHHHH AYFSGKKDLFNGLAMETLEKEWAVYPVLHIDFSVSKYMTAEALSAVINYQLLQWEKLYGR HHHCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC EEGETTFSLRLKGIIQRAYTQTGKPVVILVDEYDAPMLDSNNNTELQIEIRDIMRDFFSP CCCCEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHH LKAQGQYIRFLFITGISKFSQMSIFSELNNLQNISMWDEYSAICGITEQEVHTLQIDIEQ HHCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHCEEEEEEEHHH MAQANNETYEEACTHLKQQYDGYHFSENSEDIYNPFSLFNAFAQKKYSNFWFSTGTPTFL HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCEEECCCHHHH IDLLQESNFDIRELDDTTATAEQFDAPTNRITDPLPVLYQSGYLTIKGYDPSFQLYTLAY HHHHHHCCCCCEECCCCHHHHHHCCCCHHHCCCCCHHHCCCCEEEEEECCCCEEEEEEEC PNKEVRKGFLESLMPAYVHLPARENTFYIVSFIKDLRAGNLDGCLERLKSFFASIPNKLN CCHHHHHHHHHHHHHHHEECCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHCC NKEEKHYQTIFYLFFRLMGQYIDVEVDTAIGRADAIVKLQDTLYVFEFKVDGTPEEALAQ CCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEECEEEEEEEEECCCHHHHHHH INSKEYAIPYQVGDWKIIKVGVNFDSATRTIGTWKTER CCCCCEEEEEEECCEEEEEEEECCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2388847 [H]