| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349427
Identifier: 29349427
GI number: 29349427
Start: 5236440
End: 5236880
Strand: Reverse
Name: 29349427
Synonym: BT_4019
Alternate gene names: NA
Gene position: 5236880-5236440 (Counterclockwise)
Preceding gene: 29349428
Following gene: 29349426
Centisome position: 83.65
GC content: 48.3
Gene sequence:
>441_bases TTGTCGGTAGGCGGAGCGGTAGCCGTCATTCAGCATCCGTTCGATGTCGGATTCACGGTAGAGGATTTTACCGCCCAACT GGATATAGGCGATACGCCCTTCATTGCGGTAGTCCTGAAGTGTCCGGCGGCTCACCTTCAGCCGTGCCGACACCTCCTTG TCAGTGAAGAAACGCTCACCGCCCAATGTCGGGCGGTAATTGGCGGTCAGGTGCTCTACATTATCAAGCAGTCGGTCAAG ACTGCCCATAAAGTGGATTATCCACTTGTTGTCCTTGTTAATCAACTCATTCATATTACTCTGGATTTAGTGGGTGTTGT CATTATATTTAATTCATATAGTCTTTCCTTTGAACTTCGCTTCCTTTCTTCTATCCTCCACAACGGAGACAATGAGTTCC ACGTCTTCGGGACGGTAATACGTCTTGTGGTTTATCTGTGA
Upstream 100 bases:
>100_bases CTGTAAGCCGTTCCTTTTTTCTTTTTGTCGAAAGTCTATTGCTGCCGCAATACAGGGCATACGGCAAACTGCACTCCTTT AAGAAAAATCAAGTTATCCT
Downstream 100 bases:
>100_bases ATAAGCCAGCGTGCCGTTATCCCGAAGCGTCTGTAACGTGCGAGGGCTGATGTTGAGCATACGGCACACGTCCTGATTAT CCATCCATTCGCTCATTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MSVGGAVAVIQHPFDVGFTVEDFTAQLDIGDTPFIAVVLKCPAAHLQPCRHLLVSEETLTAQCRAVIGGQVLYIIKQSVK TAHKVDYPLVVLVNQLIHITLDLVGVVIIFNSYSLSFELRFLSSILHNGDNEFHVFGTVIRLVVYL
Sequences:
>Translated_146_residues MSVGGAVAVIQHPFDVGFTVEDFTAQLDIGDTPFIAVVLKCPAAHLQPCRHLLVSEETLTAQCRAVIGGQVLYIIKQSVK TAHKVDYPLVVLVNQLIHITLDLVGVVIIFNSYSLSFELRFLSSILHNGDNEFHVFGTVIRLVVYL >Mature_145_residues SVGGAVAVIQHPFDVGFTVEDFTAQLDIGDTPFIAVVLKCPAAHLQPCRHLLVSEETLTAQCRAVIGGQVLYIIKQSVKT AHKVDYPLVVLVNQLIHITLDLVGVVIIFNSYSLSFELRFLSSILHNGDNEFHVFGTVIRLVVYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16058; Mature: 15927
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVGGAVAVIQHPFDVGFTVEDFTAQLDIGDTPFIAVVLKCPAAHLQPCRHLLVSEETLT CCCCCEEEEEECCCCCCCEEHHCEEEECCCCCCCEEHEECCCHHHHHHHHHHHHCCHHHH AQCRAVIGGQVLYIIKQSVKTAHKVDYPLVVLVNQLIHITLDLVGVVIIFNSYSLSFELR HHHHHHHCCHHHEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH FLSSILHNGDNEFHVFGTVIRLVVYL HHHHHHHCCCCCEEHHHHHHHHHHCC >Mature Secondary Structure SVGGAVAVIQHPFDVGFTVEDFTAQLDIGDTPFIAVVLKCPAAHLQPCRHLLVSEETLT CCCCEEEEEECCCCCCCEEHHCEEEECCCCCCCEEHEECCCHHHHHHHHHHHHCCHHHH AQCRAVIGGQVLYIIKQSVKTAHKVDYPLVVLVNQLIHITLDLVGVVIIFNSYSLSFELR HHHHHHHCCHHHEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH FLSSILHNGDNEFHVFGTVIRLVVYL HHHHHHHCCCCCEEHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA