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The map label for this gene is potC [H]

Identifier: 29346699

GI number: 29346699

Start: 1606023

End: 1606820

Strand: Reverse

Name: potC [H]

Synonym: BT_1289

Alternate gene names: 29346699

Gene position: 1606820-1606023 (Counterclockwise)

Preceding gene: 29346700

Following gene: 29346698

Centisome position: 25.67

GC content: 45.99

Gene sequence:

>798_bases
ATGGTAAAGAAGATATTCGCTCAGACTTACCTGTGGGTATTACTGCTGTTGCTATATTCCCCTATTGTGATCATTGTGAT
TTACTCTTTTACCGAGGCGAAGGTATTGGGTAACTGGACCGGGTTTTCGACCAAACTTTATTCATCGCTATTTAATACAG
GTGCCCATCATTCTCTGATGAATGCCCTGATCAATACCATTACCATTGCGCTGCTGGCTGCCACGGCATCTACCTTGTTG
GGCAGCATCGCTGCCATCGGCATCTTCAACTTAAAAGCACGCTCGCGCAAGGCGATTGGTTTTGTGAATAGTATTCCTAT
TCTGAACGGTGATATCATAACCGGTATATCGCTTTTCCTTTTATTCGTATCTCTCGGAATCACGCAGGGATATACCACAG
TGGTACTGGCGCACATCACTTTTTGTACTCCTTACGTCGTATTAAGCGTTCTGCCGCGCCTGAAACAAATGAATCCGAAC
ATTTATGAAGCTGCCCTCGATTTGGGAGCTACACCTATGCAGGCTTTGCGGAAGGTAATCATTCCGGAGATTCGTCCGGG
AATGATCAGCGGCTTTATGCTTGCACTGACGCTTTCAATCGATGATTTTGCCGTAACTGTATTTACCATCGGTAATCAAG
GGCTGGAAACGCTTTCCACCTATATCTATGCCGATGCCCGCAAGGGAGGTCTGACTCCCGAGCTCCGCCCGTTGTCCGCC
ATTATTTTTGTGGTGGTACTGGCTTTACTGATAGTAATTAATTACCGTGCCGGAAAAACGAAGAAGAAAGAATCATGA

Upstream 100 bases:

>100_bases
ACTATGGGGCAGCACTTTCGCTGATCATGCTGCTGCTGATAGCCGCGACTTCACTGTTCAGTACCGATGATAAGGATAAT
ACGAACGAAGGAGGTGGGCT

Downstream 100 bases:

>100_bases
ACATGTACTGCTACGTAAATAAAATGAAAAGAATAGTTGCTGTTAACTTGTTTTTGCTGGTGCTGGCTGGTTTTCTGAGC
GGTTGCTACAATTCCGGCGA

Product: putrescine transport system permease potI

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MVKKIFAQTYLWVLLLLLYSPIVIIVIYSFTEAKVLGNWTGFSTKLYSSLFNTGAHHSLMNALINTITIALLAATASTLL
GSIAAIGIFNLKARSRKAIGFVNSIPILNGDIITGISLFLLFVSLGITQGYTTVVLAHITFCTPYVVLSVLPRLKQMNPN
IYEAALDLGATPMQALRKVIIPEIRPGMISGFMLALTLSIDDFAVTVFTIGNQGLETLSTYIYADARKGGLTPELRPLSA
IIFVVVLALLIVINYRAGKTKKKES

Sequences:

>Translated_265_residues
MVKKIFAQTYLWVLLLLLYSPIVIIVIYSFTEAKVLGNWTGFSTKLYSSLFNTGAHHSLMNALINTITIALLAATASTLL
GSIAAIGIFNLKARSRKAIGFVNSIPILNGDIITGISLFLLFVSLGITQGYTTVVLAHITFCTPYVVLSVLPRLKQMNPN
IYEAALDLGATPMQALRKVIIPEIRPGMISGFMLALTLSIDDFAVTVFTIGNQGLETLSTYIYADARKGGLTPELRPLSA
IIFVVVLALLIVINYRAGKTKKKES
>Mature_265_residues
MVKKIFAQTYLWVLLLLLYSPIVIIVIYSFTEAKVLGNWTGFSTKLYSSLFNTGAHHSLMNALINTITIALLAATASTLL
GSIAAIGIFNLKARSRKAIGFVNSIPILNGDIITGISLFLLFVSLGITQGYTTVVLAHITFCTPYVVLSVLPRLKQMNPN
IYEAALDLGATPMQALRKVIIPEIRPGMISGFMLALTLSIDDFAVTVFTIGNQGLETLSTYIYADARKGGLTPELRPLSA
IIFVVVLALLIVINYRAGKTKKKES

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=223, Percent_Identity=37.6681614349776, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1787081, Length=263, Percent_Identity=36.5019011406844, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787714, Length=206, Percent_Identity=30.5825242718447, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788764, Length=74, Percent_Identity=39.1891891891892, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28801; Mature: 28801

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKKIFAQTYLWVLLLLLYSPIVIIVIYSFTEAKVLGNWTGFSTKLYSSLFNTGAHHSLM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH
NALINTITIALLAATASTLLGSIAAIGIFNLKARSRKAIGFVNSIPILNGDIITGISLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHCCCCCCCHHHHHHHHHH
LFVSLGITQGYTTVVLAHITFCTPYVVLSVLPRLKQMNPNIYEAALDLGATPMQALRKVI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
IPEIRPGMISGFMLALTLSIDDFAVTVFTIGNQGLETLSTYIYADARKGGLTPELRPLSA
CCCCCCHHHHHHHHHHEEECCHHEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
IIFVVVLALLIVINYRAGKTKKKES
HHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVKKIFAQTYLWVLLLLLYSPIVIIVIYSFTEAKVLGNWTGFSTKLYSSLFNTGAHHSLM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH
NALINTITIALLAATASTLLGSIAAIGIFNLKARSRKAIGFVNSIPILNGDIITGISLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHCCCCCCCHHHHHHHHHH
LFVSLGITQGYTTVVLAHITFCTPYVVLSVLPRLKQMNPNIYEAALDLGATPMQALRKVI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
IPEIRPGMISGFMLALTLSIDDFAVTVFTIGNQGLETLSTYIYADARKGGLTPELRPLSA
CCCCCCHHHHHHHHHHEEECCHHEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
IIFVVVLALLIVINYRAGKTKKKES
HHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]