Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
---|---|
Accession | NC_004663 |
Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29346658
Identifier: 29346658
GI number: 29346658
Start: 1554128
End: 1555723
Strand: Reverse
Name: 29346658
Synonym: BT_1248
Alternate gene names: NA
Gene position: 1555723-1554128 (Counterclockwise)
Preceding gene: 29346659
Following gene: 29346657
Centisome position: 24.85
GC content: 42.29
Gene sequence:
>1596_bases ATGAAAGAGTTGGGAGTACCCGTTCGTTCCTGGGTGCCCGATTGGTTGGGGTTCTGTTGCATTTTCATTGTTATTCTTCC GGTTACCATGCTGAATGGTTCGTATACCGGAAGCATGCTCGAAGTATCGAATACGCTTGGAACCAATTCGGAAGATATAA CGATGGGATATTATGCGGCTTCGGCAGGCATGGCCATTGCTTATCCTATTATTCCTAAAGTGCTGGCAGCCGTTTCGGTC AAGTTTCTCTTGCTGATAGACTTGCTCCTGCAGTTCTTTTTGAGTTGGATTTGCGCCCGTTCGCAGAATGCCGATATTCT GATTGCCTGCAGTTTTGCTATCGGCTTTCTGAAAGGTTTTCTGATGTTATGGTTTATTCGTTATGCACAGAAGATTTTCA GTGCGAAGAATATCCGCAGCGAGTTCTATTCTTATTTTTATCCATTAGTGTACGGGGGCGGACAGGCTTCCATGTTGGTC ACTGCGCAATTGGCATATCACTATAACTGGAAGTATATGTATTACTTCATGATGCTTTTGATTCTGGTTTCTGTTCTGTT TGTTATCATCTGTTTCCGGCATAACCGCCCGATTAAATCGGTGCCGTTATCCGATTTGCATATTCGGGAGATGTTTATCA TTTCGGTAGGGCTGCTGATGCTGATTTACGTCATCAATTATGGGAAAGTTCTGGATTGGATGGCTTCTGCCAAACTTTGT GCTTATATTGTAATTTCTCCTATACTGATCGCATTATTTATCTGGATTCAGCACCATTCGAAGAATCCCTATGTAAGTCT TGCCCCTCTGTTTCAGCCTAAAGCAATCATCGGATATTTCTATATGATGCTTGTTATGTTTTTCAGTACATCCACCACAT TATTGACCAATTACCTGAGCATCATCCTGAAAGTAGACAGCACGCATACCTATTCTCTTTATATCTTTTTGCTCCCGGGG TATGTAATCGGAGCTTTTATCTGTTTCTGGTGGTTTCGTTGGCAGCGTTGGCGTTTCCGGTTTCTGATAGCGGGCGGAAT GAGTTGTTTTGTTATTTTCTTTGGTGTTCTTTATTTTGGCATTGCGCCGAACAGTACGTATGAAATGTTATATCTGCCCA TCTTTTTTCGCGGATTGGGTATGTTGACTTTGATTATAGCCTTTGCCTTGTTTGCCGTAGAAGATTTGAACCCGAAGTTT TTGTTGTCGAATGCTTTCTTTCTGATAATCTTCCGTTCGGTACTGGCACCTATCATGGCTACTTCTTTTTACAGCAATAT GCTGTATCGTCTGCAACAGAAATATATATATTCTTTGTCGGAGACTATCACGACTGCCGACCCGCTGGCTGCGTCCCGTT ATACTCAATCTCTGAATAATGCGCTTGCACAAGGACATAGATATGATGAAGCGGTACAGATAGCTACCCATTCTCTTTAT GGAACTTTGCAGGAGCAGAGTCTGTTGCTTGCACTGAAAGAAATATTAGGTTATCTGTTGGTGATATCGGTCATAATAGC TGTTATCTCGCGTTTCATTCCGTTTCATAAGACGATTCGTGTTACATTTGCCAAGACGGGAGATGATATGGTATAG
Upstream 100 bases:
>100_bases TCCCGGTACGGATAGAACTGGAGAATATCTCTTCAGAAGAAATGGCACAATTAAGAGCGGGTATGATGGTTGAAACAGAA GCTTTGCGCAAATGATAACA
Downstream 100 bases:
>100_bases CATATAAAAATGAGTAAATCATCCCAATTTTTCAATTCTTTTTCCTATATTTGGCTGGTAATCACTGGAGAACAGATTCT CTCCGGAGTAGGACAGATCT
Product: putative transport protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 531; Mature: 531
Protein sequence:
>531_residues MKELGVPVRSWVPDWLGFCCIFIVILPVTMLNGSYTGSMLEVSNTLGTNSEDITMGYYAASAGMAIAYPIIPKVLAAVSV KFLLLIDLLLQFFLSWICARSQNADILIACSFAIGFLKGFLMLWFIRYAQKIFSAKNIRSEFYSYFYPLVYGGGQASMLV TAQLAYHYNWKYMYYFMMLLILVSVLFVIICFRHNRPIKSVPLSDLHIREMFIISVGLLMLIYVINYGKVLDWMASAKLC AYIVISPILIALFIWIQHHSKNPYVSLAPLFQPKAIIGYFYMMLVMFFSTSTTLLTNYLSIILKVDSTHTYSLYIFLLPG YVIGAFICFWWFRWQRWRFRFLIAGGMSCFVIFFGVLYFGIAPNSTYEMLYLPIFFRGLGMLTLIIAFALFAVEDLNPKF LLSNAFFLIIFRSVLAPIMATSFYSNMLYRLQQKYIYSLSETITTADPLAASRYTQSLNNALAQGHRYDEAVQIATHSLY GTLQEQSLLLALKEILGYLLVISVIIAVISRFIPFHKTIRVTFAKTGDDMV
Sequences:
>Translated_531_residues MKELGVPVRSWVPDWLGFCCIFIVILPVTMLNGSYTGSMLEVSNTLGTNSEDITMGYYAASAGMAIAYPIIPKVLAAVSV KFLLLIDLLLQFFLSWICARSQNADILIACSFAIGFLKGFLMLWFIRYAQKIFSAKNIRSEFYSYFYPLVYGGGQASMLV TAQLAYHYNWKYMYYFMMLLILVSVLFVIICFRHNRPIKSVPLSDLHIREMFIISVGLLMLIYVINYGKVLDWMASAKLC AYIVISPILIALFIWIQHHSKNPYVSLAPLFQPKAIIGYFYMMLVMFFSTSTTLLTNYLSIILKVDSTHTYSLYIFLLPG YVIGAFICFWWFRWQRWRFRFLIAGGMSCFVIFFGVLYFGIAPNSTYEMLYLPIFFRGLGMLTLIIAFALFAVEDLNPKF LLSNAFFLIIFRSVLAPIMATSFYSNMLYRLQQKYIYSLSETITTADPLAASRYTQSLNNALAQGHRYDEAVQIATHSLY GTLQEQSLLLALKEILGYLLVISVIIAVISRFIPFHKTIRVTFAKTGDDMV >Mature_531_residues MKELGVPVRSWVPDWLGFCCIFIVILPVTMLNGSYTGSMLEVSNTLGTNSEDITMGYYAASAGMAIAYPIIPKVLAAVSV KFLLLIDLLLQFFLSWICARSQNADILIACSFAIGFLKGFLMLWFIRYAQKIFSAKNIRSEFYSYFYPLVYGGGQASMLV TAQLAYHYNWKYMYYFMMLLILVSVLFVIICFRHNRPIKSVPLSDLHIREMFIISVGLLMLIYVINYGKVLDWMASAKLC AYIVISPILIALFIWIQHHSKNPYVSLAPLFQPKAIIGYFYMMLVMFFSTSTTLLTNYLSIILKVDSTHTYSLYIFLLPG YVIGAFICFWWFRWQRWRFRFLIAGGMSCFVIFFGVLYFGIAPNSTYEMLYLPIFFRGLGMLTLIIAFALFAVEDLNPKF LLSNAFFLIIFRSVLAPIMATSFYSNMLYRLQQKYIYSLSETITTADPLAASRYTQSLNNALAQGHRYDEAVQIATHSLY GTLQEQSLLLALKEILGYLLVISVIIAVISRFIPFHKTIRVTFAKTGDDMV
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60772; Mature: 60772
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKELGVPVRSWVPDWLGFCCIFIVILPVTMLNGSYTGSMLEVSNTLGTNSEDITMGYYAA CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHCCCCCCCEEEEEEEH SAGMAIAYPIIPKVLAAVSVKFLLLIDLLLQFFLSWICARSQNADILIACSFAIGFLKGF HCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHH LMLWFIRYAQKIFSAKNIRSEFYSYFYPLVYGGGQASMLVTAQLAYHYNWKYMYYFMMLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHHCCHHHHHHHHHHH ILVSVLFVIICFRHNRPIKSVPLSDLHIREMFIISVGLLMLIYVINYGKVLDWMASAKLC HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYIVISPILIALFIWIQHHSKNPYVSLAPLFQPKAIIGYFYMMLVMFFSTSTTLLTNYLS HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH IILKVDSTHTYSLYIFLLPGYVIGAFICFWWFRWQRWRFRFLIAGGMSCFVIFFGVLYFG HHEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHC IAPNSTYEMLYLPIFFRGLGMLTLIIAFALFAVEDLNPKFLLSNAFFLIIFRSVLAPIMA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH TSFYSNMLYRLQQKYIYSLSETITTADPLAASRYTQSLNNALAQGHRYDEAVQIATHSLY HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH GTLQEQSLLLALKEILGYLLVISVIIAVISRFIPFHKTIRVTFAKTGDDMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC >Mature Secondary Structure MKELGVPVRSWVPDWLGFCCIFIVILPVTMLNGSYTGSMLEVSNTLGTNSEDITMGYYAA CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHCCCCCCCEEEEEEEH SAGMAIAYPIIPKVLAAVSVKFLLLIDLLLQFFLSWICARSQNADILIACSFAIGFLKGF HCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHH LMLWFIRYAQKIFSAKNIRSEFYSYFYPLVYGGGQASMLVTAQLAYHYNWKYMYYFMMLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHHCCHHHHHHHHHHH ILVSVLFVIICFRHNRPIKSVPLSDLHIREMFIISVGLLMLIYVINYGKVLDWMASAKLC HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYIVISPILIALFIWIQHHSKNPYVSLAPLFQPKAIIGYFYMMLVMFFSTSTTLLTNYLS HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH IILKVDSTHTYSLYIFLLPGYVIGAFICFWWFRWQRWRFRFLIAGGMSCFVIFFGVLYFG HHEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHC IAPNSTYEMLYLPIFFRGLGMLTLIIAFALFAVEDLNPKFLLSNAFFLIIFRSVLAPIMA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH TSFYSNMLYRLQQKYIYSLSETITTADPLAASRYTQSLNNALAQGHRYDEAVQIATHSLY HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH GTLQEQSLLLALKEILGYLLVISVIIAVISRFIPFHKTIRVTFAKTGDDMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA