Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
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Accession | NC_004663 |
Length | 6,260,361 |
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The map label for this gene is 29346649
Identifier: 29346649
GI number: 29346649
Start: 1543133
End: 1544029
Strand: Reverse
Name: 29346649
Synonym: BT_1239
Alternate gene names: NA
Gene position: 1544029-1543133 (Counterclockwise)
Preceding gene: 29346652
Following gene: 29346647
Centisome position: 24.66
GC content: 49.39
Gene sequence:
>897_bases ATGGAGACAGAAGAAATCAGAGAAAAGAAAGAACCGAAGAGACTTCCCGTATGGGCGTGCATCCTGTTGTTTGCACTGGG GCTTTTCGTCACCTTTGGATTGTATAGTACGATAGGCTTCGGAGTTTTATCTCTGATTCTTGGTGATGAGGCAAGGCACC CCGGATTGTTGGGGCATATGGTGGCGGAAGCCGGCATGCTGCTGGCTGTGCTGACTTCGGCAGTGATTCTGCTCTATTTT GAGCGTCGCCCTTTCTCTGACTTGGGACTGACACTGAAAGGTCATGCACGGGGATTGTGGTACGGACTGCTGGCAGCCAT CCTTCTCTACTTGATCGGCTTCGGACTGTCTTTGGCTTTGGGTGAGGTGGAAGTAACCGGTTTTCGATTCGATCCTCTGA ATCTGCTTGCTACCTTTGTGTTCTGCCTGCTGGTGGCTCTGGCCGAAGAAATCATGATGCGTGGCTATATACTCGGCCGT CTGCTGCATACCCGGATGAATAAATTCCTGTCTCTTTTTGTCTCCGCACTGCTGTTCGCATTGCTGCACCTCTTCAATCC GAACCTTGCCTTCCTGCCTATGCTGAATCTGTTACTTGCAGGTATGTTTATCGGCGCTTCCTATTTATATACGCGCAATC TTTGTTTCCCTATTTCCCTTCATCTTTTCTGGAACTGGATTCAGGGCCCGATACTGGGCTATCAGGTAAGTGGAAATGAC TTTGGGACATCCCTGCTGACGCTGCATCTGCCCGAAGAGAACGTACTGAATGGCGGAGCCTTCGGGTTTGAAGGCTCGCT CATTTGTACAGTACTGATGATTATCTTTACGATTTTAATTGTTTGGTGGGGAGAAAAACGGGAGGCAATCAGTCTTGCTG TACCCCGATCATGCTAA
Upstream 100 bases:
>100_bases TATGCAGATTTGTTCAGACAAATATAGGAAAAATAGGTAAGACACGATGTTTTTTTATGTTTTATATCTAATTTTGTAGC GTGATTAACAAAAAGTAAAA
Downstream 100 bases:
>100_bases GCTGAATCCGTTTCCGGTCGGTATCCACGTTCATCACTCTGACCATGACATGCTGGTGGATGGACACGATTTCTGTAGGA TCGGAGATGTATCGTTCGGC
Product: putative metal-dependent membrane protease
Products: NA
Alternate protein names: Abortive Infection Protein
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues METEEIREKKEPKRLPVWACILLFALGLFVTFGLYSTIGFGVLSLILGDEARHPGLLGHMVAEAGMLLAVLTSAVILLYF ERRPFSDLGLTLKGHARGLWYGLLAAILLYLIGFGLSLALGEVEVTGFRFDPLNLLATFVFCLLVALAEEIMMRGYILGR LLHTRMNKFLSLFVSALLFALLHLFNPNLAFLPMLNLLLAGMFIGASYLYTRNLCFPISLHLFWNWIQGPILGYQVSGND FGTSLLTLHLPEENVLNGGAFGFEGSLICTVLMIIFTILIVWWGEKREAISLAVPRSC
Sequences:
>Translated_298_residues METEEIREKKEPKRLPVWACILLFALGLFVTFGLYSTIGFGVLSLILGDEARHPGLLGHMVAEAGMLLAVLTSAVILLYF ERRPFSDLGLTLKGHARGLWYGLLAAILLYLIGFGLSLALGEVEVTGFRFDPLNLLATFVFCLLVALAEEIMMRGYILGR LLHTRMNKFLSLFVSALLFALLHLFNPNLAFLPMLNLLLAGMFIGASYLYTRNLCFPISLHLFWNWIQGPILGYQVSGND FGTSLLTLHLPEENVLNGGAFGFEGSLICTVLMIIFTILIVWWGEKREAISLAVPRSC >Mature_298_residues METEEIREKKEPKRLPVWACILLFALGLFVTFGLYSTIGFGVLSLILGDEARHPGLLGHMVAEAGMLLAVLTSAVILLYF ERRPFSDLGLTLKGHARGLWYGLLAAILLYLIGFGLSLALGEVEVTGFRFDPLNLLATFVFCLLVALAEEIMMRGYILGR LLHTRMNKFLSLFVSALLFALLHLFNPNLAFLPMLNLLLAGMFIGASYLYTRNLCFPISLHLFWNWIQGPILGYQVSGND FGTSLLTLHLPEENVLNGGAFGFEGSLICTVLMIIFTILIVWWGEKREAISLAVPRSC
Specific function: Unknown
COG id: COG1266
COG function: function code R; Predicted metal-dependent membrane protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33133; Mature: 33133
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METEEIREKKEPKRLPVWACILLFALGLFVTFGLYSTIGFGVLSLILGDEARHPGLLGHM CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH VAEAGMLLAVLTSAVILLYFERRPFSDLGLTLKGHARGLWYGLLAAILLYLIGFGLSLAL HHHHHHHHHHHHHHHHHHHHCCCCCHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH GEVEVTGFRFDPLNLLATFVFCLLVALAEEIMMRGYILGRLLHTRMNKFLSLFVSALLFA CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLHLFNPNLAFLPMLNLLLAGMFIGASYLYTRNLCFPISLHLFWNWIQGPILGYQVSGND HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCC FGTSLLTLHLPEENVLNGGAFGFEGSLICTVLMIIFTILIVWWGEKREAISLAVPRSC CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC >Mature Secondary Structure METEEIREKKEPKRLPVWACILLFALGLFVTFGLYSTIGFGVLSLILGDEARHPGLLGHM CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH VAEAGMLLAVLTSAVILLYFERRPFSDLGLTLKGHARGLWYGLLAAILLYLIGFGLSLAL HHHHHHHHHHHHHHHHHHHHCCCCCHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH GEVEVTGFRFDPLNLLATFVFCLLVALAEEIMMRGYILGRLLHTRMNKFLSLFVSALLFA CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLHLFNPNLAFLPMLNLLLAGMFIGASYLYTRNLCFPISLHLFWNWIQGPILGYQVSGND HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCC FGTSLLTLHLPEENVLNGGAFGFEGSLICTVLMIIFTILIVWWGEKREAISLAVPRSC CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA