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The map label for this gene is ykpA [H]

Identifier: 29346652

GI number: 29346652

Start: 1546314

End: 1547933

Strand: Reverse

Name: ykpA [H]

Synonym: BT_1242

Alternate gene names: 29346652

Gene position: 1547933-1546314 (Counterclockwise)

Preceding gene: 29346655

Following gene: 29346649

Centisome position: 24.73

GC content: 49.57

Gene sequence:

>1620_bases
ATGATTACAGTTTCAAACGTTTCGGTGCAGTTTGGTAAAAGAGTCTTGTTTAATGACGTGAACCTGAAATTTACAAGTGG
CAACTGCTATGGTATTATCGGTGCGAACGGTGCGGGAAAATCCACCTTCCTTCGTACAATCTACGGAGATCTGGACCCGA
CGACCGGTACGATTGCCCTGGGACCGGGCGAACGCCTGTCGGTGTTGAGCCAGGACCACTTTAAATGGGATGCTTATACG
GTAATGGACACCGTAATGATGGGCCACACCGTGTTGTGGGACATTATGAAGCAGCGTGAAGTATTGTACGCCAAGGAAGA
CTTCACGGACGAAGACGGACTGAAAGTATCCGAACTGGAAGAGAAATTTGCCGAGCTGGACGGATGGAATGCTGAGAGTG
ACGCAGCCATGCTGTTGAGCGGTCTGGGCATCAAGGAAGACAAGCATTATACATTGATGGGTGAGCTGAGCGGTAAGGAA
AAGGTGCGTGTGATGCTTGCGCAAGCATTGTACGGCAACCCCGACAACCTCCTTCTGGACGAACCTACCAATGACCTCGA
TATGGAAACAGTGACCTGGCTGGAAGAATACCTTTCCAACTTCGAGCACACCGTGCTGGTGGTAAGCCACGACCGTCACT
TCCTCGACTCCGTATGTACGCACACCGTAGACATCGACTACGGAAAGATCAATATGTTTGCCGGAAACTACAGTTTCTGG
TACGAATCTAGTCAGCTGGCGCTCCGTCAGCAGCAGAACCAGAAGGCGAAGGCTGAGGAGAAGAAGAAAGAACTGGAAGA
ATTTATCCGCCGTTTCAGTGCCAACGTAGCGAAGAGCAAGCAGACCACAAGCCGCAAGAAGATGCTGGAAAAACTGAATG
TAGAAGAAATCAAACCTTCTTCACGCAAGTATCCGGGCATCATCTTCACTCCCGAACGCGAGCCGGGCAACCAGATCCTC
GAAGTTTCCGGACTGAGCAAGAAGACGGAAGAAGGCGTAGTGCTGTTCAGCGACGTGAACTTCAACATCGAAAAGGGCGA
CAAAGTGGTATTCCTTTCACGTAACCCGCGTGCGATGACCGCTTTCTTCGAAATCATCAACGGAAACATGAAGCCGGATG
CCGGACAGTTCAACTGGGGAGTAACCATCACAACGGCTTACCTGCCTCTGGACAATACGGACTTCTTCAACACTGACCTT
AACCTGGTGGACTGGCTGAGCCAGTTCGGCGAAGGTAACGAAGTGTACATGAAGGGCTTCCTCGGACGTATGCTGTTCTC
CGGCGAAGAGGTACTGAAGAAAGTCAGCGTACTTTCCGGAGGTGAAAAGATGCGTTGTATGATTGCACGTATGCAGCTCC
GCAATGCGAACTGTCTGATTCTGGATACTCCGACCAATCACTTGGACCTGGAATCTATTCAGGCTTTCAACAACAACCTG
AAGACATACAAAGGAAATATCCTCTTCTCTTCGCATGACCACGAATTTATTCAGACGGTTGCCAACCGCATTATCGAACT
GACTCCGAACGGTATCATCGACAAGATGATGGAATATGACGAATATATCACTTCGGACCATATCAAGGAGTTGAGGGCGA
AGATGTACGGTGATAAATAG

Upstream 100 bases:

>100_bases
AGATTGACACATTCCGGATAGCTCATAATTCATTTTAAATGTCTACCTTTGCACGCTCAAATAATAATATAGTAACTGGT
AAAATAGTAAATAATAGAAA

Downstream 100 bases:

>100_bases
CGTGTTGTATCAGCCGGATACACTGAATAATGTATAGAAGGTAGTATAAATAGTACCTTACTGTTAAATAAAGGGAAATG
CTTGTTGACTGTCGTCACAT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MITVSNVSVQFGKRVLFNDVNLKFTSGNCYGIIGANGAGKSTFLRTIYGDLDPTTGTIALGPGERLSVLSQDHFKWDAYT
VMDTVMMGHTVLWDIMKQREVLYAKEDFTDEDGLKVSELEEKFAELDGWNAESDAAMLLSGLGIKEDKHYTLMGELSGKE
KVRVMLAQALYGNPDNLLLDEPTNDLDMETVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDYGKINMFAGNYSFW
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVEEIKPSSRKYPGIIFTPEREPGNQIL
EVSGLSKKTEEGVVLFSDVNFNIEKGDKVVFLSRNPRAMTAFFEIINGNMKPDAGQFNWGVTITTAYLPLDNTDFFNTDL
NLVDWLSQFGEGNEVYMKGFLGRMLFSGEEVLKKVSVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
KTYKGNILFSSHDHEFIQTVANRIIELTPNGIIDKMMEYDEYITSDHIKELRAKMYGDK

Sequences:

>Translated_539_residues
MITVSNVSVQFGKRVLFNDVNLKFTSGNCYGIIGANGAGKSTFLRTIYGDLDPTTGTIALGPGERLSVLSQDHFKWDAYT
VMDTVMMGHTVLWDIMKQREVLYAKEDFTDEDGLKVSELEEKFAELDGWNAESDAAMLLSGLGIKEDKHYTLMGELSGKE
KVRVMLAQALYGNPDNLLLDEPTNDLDMETVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDYGKINMFAGNYSFW
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVEEIKPSSRKYPGIIFTPEREPGNQIL
EVSGLSKKTEEGVVLFSDVNFNIEKGDKVVFLSRNPRAMTAFFEIINGNMKPDAGQFNWGVTITTAYLPLDNTDFFNTDL
NLVDWLSQFGEGNEVYMKGFLGRMLFSGEEVLKKVSVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
KTYKGNILFSSHDHEFIQTVANRIIELTPNGIIDKMMEYDEYITSDHIKELRAKMYGDK
>Mature_539_residues
MITVSNVSVQFGKRVLFNDVNLKFTSGNCYGIIGANGAGKSTFLRTIYGDLDPTTGTIALGPGERLSVLSQDHFKWDAYT
VMDTVMMGHTVLWDIMKQREVLYAKEDFTDEDGLKVSELEEKFAELDGWNAESDAAMLLSGLGIKEDKHYTLMGELSGKE
KVRVMLAQALYGNPDNLLLDEPTNDLDMETVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDYGKINMFAGNYSFW
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVEEIKPSSRKYPGIIFTPEREPGNQIL
EVSGLSKKTEEGVVLFSDVNFNIEKGDKVVFLSRNPRAMTAFFEIINGNMKPDAGQFNWGVTITTAYLPLDNTDFFNTDL
NLVDWLSQFGEGNEVYMKGFLGRMLFSGEEVLKKVSVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
KTYKGNILFSSHDHEFIQTVANRIIELTPNGIIDKMMEYDEYITSDHIKELRAKMYGDK

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=528, Percent_Identity=28.4090909090909, Blast_Score=241, Evalue=9e-64,
Organism=Homo sapiens, GI27881506, Length=512, Percent_Identity=29.6875, Blast_Score=201, Evalue=1e-51,
Organism=Homo sapiens, GI10947137, Length=514, Percent_Identity=29.5719844357977, Blast_Score=201, Evalue=2e-51,
Organism=Homo sapiens, GI10947135, Length=506, Percent_Identity=24.901185770751, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI69354671, Length=506, Percent_Identity=24.901185770751, Blast_Score=154, Evalue=2e-37,
Organism=Escherichia coli, GI1787041, Length=531, Percent_Identity=42.3728813559322, Blast_Score=478, Evalue=1e-136,
Organism=Escherichia coli, GI1789751, Length=512, Percent_Identity=29.6875, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI2367384, Length=525, Percent_Identity=30.4761904761905, Blast_Score=227, Evalue=2e-60,
Organism=Escherichia coli, GI1787182, Length=526, Percent_Identity=27.9467680608365, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI1786398, Length=238, Percent_Identity=30.2521008403361, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=25.2136752136752, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1788644, Length=240, Percent_Identity=28.3333333333333, Blast_Score=65, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17553372, Length=515, Percent_Identity=30.873786407767, Blast_Score=234, Evalue=7e-62,
Organism=Caenorhabditis elegans, GI17555318, Length=543, Percent_Identity=25.5985267034991, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17559834, Length=515, Percent_Identity=26.4077669902913, Blast_Score=178, Evalue=6e-45,
Organism=Caenorhabditis elegans, GI17565938, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=216, Percent_Identity=24.537037037037, Blast_Score=67, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=546, Percent_Identity=29.4871794871795, Blast_Score=216, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6320874, Length=525, Percent_Identity=28.5714285714286, Blast_Score=205, Evalue=2e-53,
Organism=Saccharomyces cerevisiae, GI6325030, Length=428, Percent_Identity=26.4018691588785, Blast_Score=114, Evalue=5e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=417, Percent_Identity=25.4196642685851, Blast_Score=96, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6324314, Length=244, Percent_Identity=29.0983606557377, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24666836, Length=513, Percent_Identity=30.6042884990253, Blast_Score=244, Evalue=1e-64,
Organism=Drosophila melanogaster, GI24641342, Length=537, Percent_Identity=27.7467411545624, Blast_Score=196, Evalue=5e-50,
Organism=Drosophila melanogaster, GI24642252, Length=545, Percent_Identity=24.954128440367, Blast_Score=183, Evalue=3e-46,
Organism=Drosophila melanogaster, GI18859989, Length=545, Percent_Identity=24.954128440367, Blast_Score=183, Evalue=3e-46,
Organism=Drosophila melanogaster, GI21357907, Length=220, Percent_Identity=28.6363636363636, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 61249; Mature: 61249

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITVSNVSVQFGKRVLFNDVNLKFTSGNCYGIIGANGAGKSTFLRTIYGDLDPTTGTIAL
CEEEECEEHHHCCEEEEECCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE
GPGERLSVLSQDHFKWDAYTVMDTVMMGHTVLWDIMKQREVLYAKEDFTDEDGLKVSELE
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHH
EKFAELDGWNAESDAAMLLSGLGIKEDKHYTLMGELSGKEKVRVMLAQALYGNPDNLLLD
HHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEE
EPTNDLDMETVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDYGKINMFAGNYSFW
CCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHEEEECCCCEEEEEECCEEEE
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVEEIKPS
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
SRKYPGIIFTPEREPGNQILEVSGLSKKTEEGVVLFSDVNFNIEKGDKVVFLSRNPRAMT
CCCCCCEEECCCCCCCCCEEEECCCCCCCCCCEEEEEECCEEEECCCEEEEEECCCCHHH
AFFEIINGNMKPDAGQFNWGVTITTAYLPLDNTDFFNTDLNLVDWLSQFGEGNEVYMKGF
HHHHHHCCCCCCCCCCEECCEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEHHHHH
LGRMLFSGEEVLKKVSVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
HHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCC
KTYKGNILFSSHDHEFIQTVANRIIELTPNGIIDKMMEYDEYITSDHIKELRAKMYGDK
CEEECCEEEECCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MITVSNVSVQFGKRVLFNDVNLKFTSGNCYGIIGANGAGKSTFLRTIYGDLDPTTGTIAL
CEEEECEEHHHCCEEEEECCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE
GPGERLSVLSQDHFKWDAYTVMDTVMMGHTVLWDIMKQREVLYAKEDFTDEDGLKVSELE
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHH
EKFAELDGWNAESDAAMLLSGLGIKEDKHYTLMGELSGKEKVRVMLAQALYGNPDNLLLD
HHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEE
EPTNDLDMETVTWLEEYLSNFEHTVLVVSHDRHFLDSVCTHTVDIDYGKINMFAGNYSFW
CCCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHEEEECCCCEEEEEECCEEEE
YESSQLALRQQQNQKAKAEEKKKELEEFIRRFSANVAKSKQTTSRKKMLEKLNVEEIKPS
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
SRKYPGIIFTPEREPGNQILEVSGLSKKTEEGVVLFSDVNFNIEKGDKVVFLSRNPRAMT
CCCCCCEEECCCCCCCCCEEEECCCCCCCCCCEEEEEECCEEEECCCEEEEEECCCCHHH
AFFEIINGNMKPDAGQFNWGVTITTAYLPLDNTDFFNTDLNLVDWLSQFGEGNEVYMKGF
HHHHHHCCCCCCCCCCEECCEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEHHHHH
LGRMLFSGEEVLKKVSVLSGGEKMRCMIARMQLRNANCLILDTPTNHLDLESIQAFNNNL
HHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCC
KTYKGNILFSSHDHEFIQTVANRIIELTPNGIIDKMMEYDEYITSDHIKELRAKMYGDK
CEEECCEEEECCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]