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The map label for this gene is rpoE [H]

Identifier: 29346607

GI number: 29346607

Start: 1494056

End: 1494559

Strand: Reverse

Name: rpoE [H]

Synonym: BT_1197

Alternate gene names: 29346607

Gene position: 1494559-1494056 (Counterclockwise)

Preceding gene: 29346611

Following gene: 29346606

Centisome position: 23.87

GC content: 39.68

Gene sequence:

>504_bases
ATGAAAAGTTTAAGTTTCAGAAAAGATTTAATTGGAGTTCAGGAAGAGTTGCTTCGTTTTGCTTATAAATTAACTGCCAA
TCGTGAAGAAGCAAATGATTTATTGCAAGAAACATCATTAAAGGCCTTGGATAACGAGGAGAAATATGTTCCCGATACAA
ATTTCAAAGGATGGATGTACACGATCATGCGTAACATCTTTATTAATAACTACCGTAAAATAGTACGTGACCAGACATTC
GTAGATCAGACCGACAATCTGTATCATTTGAATCTCCCCCAAGACTCAGGATTTGAAAGTACGGAAGGCGCTTATGACTT
GAAAGAGATGCACCGCATCGTCAACGCGCTGCCGAAGGAATATAAAGTACCATTTTCAATGCACGTATCCGGTTTTAAAT
ACCGTGAGATCGCTGAGAAACTGGACCTACCCCTCGGAACGGTGAAGAGCCGCATTTTCTTCACACGCCAACGTTTGCAA
CAAGAGTTGAAAGATTTTGTATAA

Upstream 100 bases:

>100_bases
CTAAGAAATGACGAATTTCCCCCTGTTCGACTCATAAAATACCTTTAAACTTGCAAACGTCAAGAAAGAAACGAAATATT
AACCGTAAAACCCTTAAAGT

Downstream 100 bases:

>100_bases
ATAGGGATAACACATTAGTCAAACAATTAATTCTGGTAAGGAGCAACGAGTAAAAACTCGCTTGCTCCTTTGATTTTGTG
ACAATATGATATTAAACATA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKSLSFRKDLIGVQEELLRFAYKLTANREEANDLLQETSLKALDNEEKYVPDTNFKGWMYTIMRNIFINNYRKIVRDQTF
VDQTDNLYHLNLPQDSGFESTEGAYDLKEMHRIVNALPKEYKVPFSMHVSGFKYREIAEKLDLPLGTVKSRIFFTRQRLQ
QELKDFV

Sequences:

>Translated_167_residues
MKSLSFRKDLIGVQEELLRFAYKLTANREEANDLLQETSLKALDNEEKYVPDTNFKGWMYTIMRNIFINNYRKIVRDQTF
VDQTDNLYHLNLPQDSGFESTEGAYDLKEMHRIVNALPKEYKVPFSMHVSGFKYREIAEKLDLPLGTVKSRIFFTRQRLQ
QELKDFV
>Mature_167_residues
MKSLSFRKDLIGVQEELLRFAYKLTANREEANDLLQETSLKALDNEEKYVPDTNFKGWMYTIMRNIFINNYRKIVRDQTF
VDQTDNLYHLNLPQDSGFESTEGAYDLKEMHRIVNALPKEYKVPFSMHVSGFKYREIAEKLDLPLGTVKSRIFFTRQRLQ
QELKDFV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19828; Mature: 19828

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLSFRKDLIGVQEELLRFAYKLTANREEANDLLQETSLKALDNEEKYVPDTNFKGWMY
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
TIMRNIFINNYRKIVRDQTFVDQTDNLYHLNLPQDSGFESTEGAYDLKEMHRIVNALPKE
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHH
YKVPFSMHVSGFKYREIAEKLDLPLGTVKSRIFFTRQRLQQELKDFV
HCCCHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSLSFRKDLIGVQEELLRFAYKLTANREEANDLLQETSLKALDNEEKYVPDTNFKGWMY
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
TIMRNIFINNYRKIVRDQTFVDQTDNLYHLNLPQDSGFESTEGAYDLKEMHRIVNALPKE
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHH
YKVPFSMHVSGFKYREIAEKLDLPLGTVKSRIFFTRQRLQQELKDFV
HCCCHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]