| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29346473
Identifier: 29346473
GI number: 29346473
Start: 1350390
End: 1352090
Strand: Reverse
Name: 29346473
Synonym: BT_1063
Alternate gene names: NA
Gene position: 1352090-1350390 (Counterclockwise)
Preceding gene: 29346474
Following gene: 29346472
Centisome position: 21.6
GC content: 40.86
Gene sequence:
>1701_bases ATGAAGAAAAAGAATTTTTTTATGTTAGCGCTTGCTGCTGTGGCTTTTGCTGCTTGTAGTAACGAAGATTTAGTGCCGAC TGGGAATCCAGGTGATGATAATCAATTGGTGACAGACCCGACAGGAGACGCATGGGTGGCATTAGCTGTAAAGACTCCGG TACAAACTCGTGGATTGCATAACCCGAATCAGGAAGCTGCAACAGAGGACGAATCAAAAATCACTACAGTGCGTGCCATA TTCTTTACGGCAAATGCGAATGAGGATGCTGCAACTGTAACTGCTGACTTGACATTGGATAATGACGAAGCTGGTCTTGA TGCCAATGGTATTCCTAGTGGGGCTGCAGGTAAGGCTTTTAAAGTCCCTGCAACTTCTAAACGAATATTGATTATTGCGA ATCCATCTCCTAAATTTGAAGCAAAGACTGCTAGTGAGACAGATCAAAAATGGCCTGTTGGAACGACTTATGCAACAGTA AATGCAGCTCTTGACGATACTTCGGCTTCTATGACAACTGCTGGTAAATTTATGATGTCTAACGCTAAGGGTTCGTTGGA ACCTTCAGATGAAAATGAAGCTTCAGGGACATTTGGTGCTCCTGTCGATTTGGCTCTTTATGCAACTGAGACAGCAGCTA CTAATAATCCAATATCTATCAGAATTGACCGTGTTGTATCAAAAGTTCGTGTATATGTTACTGCTGATTCTGATGCAAAG GCAACTATTTCGGATGCGGGATGGGTGTTGAATGCTACTAACAAGACATTCTTCCCTGTATCTAAGAGAACGTTGACTTG GAATGAGACTCCTGCTAATAAACCTTTAGGTGCTCGTGGTACATGTATTACTCCGTTTGACCAGTATAAGATCGGTTCAT ACAGAGTTGACCCTAACTATAGTACTCAAGCTTTGGCTAACTATAATGCTTATACCAGTACTTCAGCTCCTTCAATTTGG AATGATCCTACAACTACGGTGAATAAAGTTGCTGAATATTGTCTTGAAAATACGCAGACTGCAACTCATAATGTACATGC TTATACTACACATGTACTGTTGAAGGCTAAATTCATTCCGTCTGAATATGGCAGACCTGCGCCAAATGATGGTACTCCAT CTACAGCTCAGGAAACAGATCCGAAACTTGTCGGTGACTGGATGTTAATCAATGGTGGCTTCTATACTTTTGCTACATTA ATGGAGTGGATTGAGGCAGAATTGAAAGCTAAATATGCTGATAAAGAGCCTACTACCTTCCCGACTGCTCGTACTACTGC GTATAATAGATATTTAGCTGCTGTTGGTGTAGGTGAAATTAGCCTTCCTGCTACAGCTGATGCTACAGCTATTACCAGTC TTGTTGACGATTTTAAAGCAACAAAAGCTAATGTAGGAAATGTTGCAGCTAAAGACAGAGCTATAACTGTAACAGGTCTT ACTTATTATGTAGGTGCTGTAAGTTACTACAAAATTATGATCAAACATGATGATACCAGTGCTGTAACAAATGAATTAGG TGAATTTGGAGTTGTTCGTAACTCTGTTTACGATATCAATGTTAAGAAGTTTAACAATCCAGGATATCCGGCTATTCCGG ATCCGGACGAAGGAACGCCGGATGAGAGTGACGAAGGCTGGTTGTCTATTGAAATTATACCTAATCCTTGGACTTGGTAT ACTCAAGAGGAAATTATGTAA
Upstream 100 bases:
>100_bases GGAACTGGCTAAGAAAAAAACGAATGCAGCTGAAATAGAAAAAATAGAAAATAGGGATAAATAAACTAGTTACAAACGCT TTTATTAATTTGTAAAAACA
Downstream 100 bases:
>100_bases TTCGGAATTAGTAATAGAAATAGATTTTTCAAATAAAAGTTGTGGGAGAAACTCTCCCACAACTTTACTCCCAATATTTT CAAAGTTGCCGAAAACTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 566; Mature: 566
Protein sequence:
>566_residues MKKKNFFMLALAAVAFAACSNEDLVPTGNPGDDNQLVTDPTGDAWVALAVKTPVQTRGLHNPNQEAATEDESKITTVRAI FFTANANEDAATVTADLTLDNDEAGLDANGIPSGAAGKAFKVPATSKRILIIANPSPKFEAKTASETDQKWPVGTTYATV NAALDDTSASMTTAGKFMMSNAKGSLEPSDENEASGTFGAPVDLALYATETAATNNPISIRIDRVVSKVRVYVTADSDAK ATISDAGWVLNATNKTFFPVSKRTLTWNETPANKPLGARGTCITPFDQYKIGSYRVDPNYSTQALANYNAYTSTSAPSIW NDPTTTVNKVAEYCLENTQTATHNVHAYTTHVLLKAKFIPSEYGRPAPNDGTPSTAQETDPKLVGDWMLINGGFYTFATL MEWIEAELKAKYADKEPTTFPTARTTAYNRYLAAVGVGEISLPATADATAITSLVDDFKATKANVGNVAAKDRAITVTGL TYYVGAVSYYKIMIKHDDTSAVTNELGEFGVVRNSVYDINVKKFNNPGYPAIPDPDEGTPDESDEGWLSIEIIPNPWTWY TQEEIM
Sequences:
>Translated_566_residues MKKKNFFMLALAAVAFAACSNEDLVPTGNPGDDNQLVTDPTGDAWVALAVKTPVQTRGLHNPNQEAATEDESKITTVRAI FFTANANEDAATVTADLTLDNDEAGLDANGIPSGAAGKAFKVPATSKRILIIANPSPKFEAKTASETDQKWPVGTTYATV NAALDDTSASMTTAGKFMMSNAKGSLEPSDENEASGTFGAPVDLALYATETAATNNPISIRIDRVVSKVRVYVTADSDAK ATISDAGWVLNATNKTFFPVSKRTLTWNETPANKPLGARGTCITPFDQYKIGSYRVDPNYSTQALANYNAYTSTSAPSIW NDPTTTVNKVAEYCLENTQTATHNVHAYTTHVLLKAKFIPSEYGRPAPNDGTPSTAQETDPKLVGDWMLINGGFYTFATL MEWIEAELKAKYADKEPTTFPTARTTAYNRYLAAVGVGEISLPATADATAITSLVDDFKATKANVGNVAAKDRAITVTGL TYYVGAVSYYKIMIKHDDTSAVTNELGEFGVVRNSVYDINVKKFNNPGYPAIPDPDEGTPDESDEGWLSIEIIPNPWTWY TQEEIM >Mature_566_residues MKKKNFFMLALAAVAFAACSNEDLVPTGNPGDDNQLVTDPTGDAWVALAVKTPVQTRGLHNPNQEAATEDESKITTVRAI FFTANANEDAATVTADLTLDNDEAGLDANGIPSGAAGKAFKVPATSKRILIIANPSPKFEAKTASETDQKWPVGTTYATV NAALDDTSASMTTAGKFMMSNAKGSLEPSDENEASGTFGAPVDLALYATETAATNNPISIRIDRVVSKVRVYVTADSDAK ATISDAGWVLNATNKTFFPVSKRTLTWNETPANKPLGARGTCITPFDQYKIGSYRVDPNYSTQALANYNAYTSTSAPSIW NDPTTTVNKVAEYCLENTQTATHNVHAYTTHVLLKAKFIPSEYGRPAPNDGTPSTAQETDPKLVGDWMLINGGFYTFATL MEWIEAELKAKYADKEPTTFPTARTTAYNRYLAAVGVGEISLPATADATAITSLVDDFKATKANVGNVAAKDRAITVTGL TYYVGAVSYYKIMIKHDDTSAVTNELGEFGVVRNSVYDINVKKFNNPGYPAIPDPDEGTPDESDEGWLSIEIIPNPWTWY TQEEIM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60954; Mature: 60954
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKNFFMLALAAVAFAACSNEDLVPTGNPGDDNQLVTDPTGDAWVALAVKTPVQTRGLH CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCHHHCCCC NPNQEAATEDESKITTVRAIFFTANANEDAATVTADLTLDNDEAGLDANGIPSGAAGKAF CCCHHHCCCCCHHEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEE KVPATSKRILIIANPSPKFEAKTASETDQKWPVGTTYATVNAALDDTSASMTTAGKFMMS ECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHCCEEEEE NAKGSLEPSDENEASGTFGAPVDLALYATETAATNNPISIRIDRVVSKVRVYVTADSDAK CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEHHHEEEEEEEEEEECCCCC ATISDAGWVLNATNKTFFPVSKRTLTWNETPANKPLGARGTCITPFDQYKIGSYRVDPNY EEECCCCEEEECCCCEEEECCCEEEEECCCCCCCCCCCCCCEECCHHHEECCCEEECCCC STQALANYNAYTSTSAPSIWNDPTTTVNKVAEYCLENTQTATHNVHAYTTHVLLKAKFIP CCHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECC SEYGRPAPNDGTPSTAQETDPKLVGDWMLINGGFYTFATLMEWIEAELKAKYADKEPTTF HHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCC PTARTTAYNRYLAAVGVGEISLPATADATAITSLVDDFKATKANVGNVAAKDRAITVTGL CCHHHHHHHEEEEEEECCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEEEEECH TYYVGAVSYYKIMIKHDDTSAVTNELGEFGVVRNSVYDINVKKFNNPGYPAIPDPDEGTP HHHHHCEEEEEEEEEECCHHHHHHHHHHHCEEECEEEEEEEEEECCCCCCCCCCCCCCCC DESDEGWLSIEIIPNPWTWYTQEEIM CCCCCCEEEEEEECCCCCCCCHHHCC >Mature Secondary Structure MKKKNFFMLALAAVAFAACSNEDLVPTGNPGDDNQLVTDPTGDAWVALAVKTPVQTRGLH CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCHHHCCCC NPNQEAATEDESKITTVRAIFFTANANEDAATVTADLTLDNDEAGLDANGIPSGAAGKAF CCCHHHCCCCCHHEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEE KVPATSKRILIIANPSPKFEAKTASETDQKWPVGTTYATVNAALDDTSASMTTAGKFMMS ECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHCCEEEEE NAKGSLEPSDENEASGTFGAPVDLALYATETAATNNPISIRIDRVVSKVRVYVTADSDAK CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEHHHEEEEEEEEEEECCCCC ATISDAGWVLNATNKTFFPVSKRTLTWNETPANKPLGARGTCITPFDQYKIGSYRVDPNY EEECCCCEEEECCCCEEEECCCEEEEECCCCCCCCCCCCCCEECCHHHEECCCEEECCCC STQALANYNAYTSTSAPSIWNDPTTTVNKVAEYCLENTQTATHNVHAYTTHVLLKAKFIP CCHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECC SEYGRPAPNDGTPSTAQETDPKLVGDWMLINGGFYTFATLMEWIEAELKAKYADKEPTTF HHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCC PTARTTAYNRYLAAVGVGEISLPATADATAITSLVDDFKATKANVGNVAAKDRAITVTGL CCHHHHHHHEEEEEEECCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEEEEECH TYYVGAVSYYKIMIKHDDTSAVTNELGEFGVVRNSVYDINVKKFNNPGYPAIPDPDEGTP HHHHHCEEEEEEEEEECCHHHHHHHHHHHCEEECEEEEEEEEEECCCCCCCCCCCCCCCC DESDEGWLSIEIIPNPWTWYTQEEIM CCCCCCEEEEEEECCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA