| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29346472
Identifier: 29346472
GI number: 29346472
Start: 1349217
End: 1350170
Strand: Reverse
Name: 29346472
Synonym: BT_1062
Alternate gene names: NA
Gene position: 1350170-1349217 (Counterclockwise)
Preceding gene: 29346473
Following gene: 29346469
Centisome position: 21.57
GC content: 40.67
Gene sequence:
>954_bases ATGAATCTAAAAAGCCTTATATGTTACGTTGCCTTAGGTATTCTGTTGATGAGTTCCGGGATAGTAGCTTCATGCGACAG CTTTAATGAAGACCTGCCGGAATGCCGCTTGTCAGTGAAGTTCAAGTATGACTATAACATGGAGTTTGCGGATGCGTTTC ATGCTCAGGTAGATAAAGTAGAACTTTATGTATTTGATAAGAATGGGAAATATCTGTTTAAACAAGCTGAAGAGGGAAGT GCATTGTCTACCGGCAATTATCTGATGGAAGTTGAACTTCCTGTCGGACAATATCAGTTTATGGCATGGGCCGGTGCACG TGATTCATATGATATCACTTCATTGACACCTGGTGTCTCTACTCTTACGGATTTAAAATTGAAACTAAAACGTGAAGCCT CTCTCATCATCAATAAAAGGATGGAAACGCTCTGGTATGGTGAAGTCATCAATGTCAACTTCGATGGGACCGTCCACCAG ACTGAGACGATAAATCTGATCAGAGATACAAAAATCGTACGATTTGGCTTCCAGTCTTATACAGGCAGCTGGACACTGGA TATGAATGACTATGACTATGAGATTATAGAATCCAATGGACATCTGGGACATGATAATTCATTACTGGATGATGATGTGT TGAGTTTCCGACCTTACTATATGGAACAGAAGGATCCTGCGACTGCCTATGTAGACATGAATACAATGAGGCTGATGGAA GACCGGAAAACTCGTTTGGTGCTTACTGAAAAAGCATCCGGAAAGAGAGTGTTCGATATAAATCTGATTGATTATCTTGC TATGACCAATGCGGAGGGTAAAAATCTGAGCACACAAGAATATCTGGATCGACAGAGCAACTATCATATAATCTTTTTCT TGTCTGAATCATGGCTTGCTGTACAGATTGTTGTCAATGGATGGGTGCATCGCATTCAGGAAGAGAATCAATAG
Upstream 100 bases:
>100_bases TTTTGATGGAATCAATAAAGTATTCTATCCTCTGAATTAGGAAATAACGAGAAAAGAGATTATTTCTTTTCCTCTATATA TAATTGAAAAAAAGGAAAAT
Downstream 100 bases:
>100_bases AATGATCTAAGAATAGTGGGGAACTATTATTAGTGGGACAGGATAAATAGTAATATCCTGAAGGGAGAACAGCCCGGGTC GATAATGATCCGGGCTGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MNLKSLICYVALGILLMSSGIVASCDSFNEDLPECRLSVKFKYDYNMEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGS ALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGTVHQ TETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLME DRKTRLVLTEKASGKRVFDINLIDYLAMTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLAVQIVVNGWVHRIQEENQ
Sequences:
>Translated_317_residues MNLKSLICYVALGILLMSSGIVASCDSFNEDLPECRLSVKFKYDYNMEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGS ALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGTVHQ TETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLME DRKTRLVLTEKASGKRVFDINLIDYLAMTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLAVQIVVNGWVHRIQEENQ >Mature_317_residues MNLKSLICYVALGILLMSSGIVASCDSFNEDLPECRLSVKFKYDYNMEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGS ALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGTVHQ TETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLME DRKTRLVLTEKASGKRVFDINLIDYLAMTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLAVQIVVNGWVHRIQEENQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36537; Mature: 36537
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLKSLICYVALGILLMSSGIVASCDSFNEDLPECRLSVKFKYDYNMEFADAFHAQVDKV CCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEEECCCHHHHHHHCEEEEE ELYVFDKNGKYLFKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVS EEEEEECCCCEEEEECCCCCEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEECCCCCH TLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGTVHQTETINLIRDTKIVRFGFQSY HHHHHHEEEHHHHHHHHHHHHHEEEECEEEEEECCCEEECCEEEEEEECCEEEEEECCCC TGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLME CCEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCEECCCCCCEEEEECHHHHHHH DRKTRLVLTEKASGKRVFDINLIDYLAMTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLA CCCEEEEEEECCCCCEEEEEEHHHEEEECCCCCCCCCHHHHHHCCCCEEEEEEECCCCEE VQIVVNGWVHRIQEENQ EEEEEHHHHHHHHCCCC >Mature Secondary Structure MNLKSLICYVALGILLMSSGIVASCDSFNEDLPECRLSVKFKYDYNMEFADAFHAQVDKV CCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEEECCCHHHHHHHCEEEEE ELYVFDKNGKYLFKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVS EEEEEECCCCEEEEECCCCCEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEECCCCCH TLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGTVHQTETINLIRDTKIVRFGFQSY HHHHHHEEEHHHHHHHHHHHHHEEEECEEEEEECCCEEECCEEEEEEECCEEEEEECCCC TGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLME CCEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCEECCCCCCEEEEECHHHHHHH DRKTRLVLTEKASGKRVFDINLIDYLAMTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLA CCCEEEEEEECCCCCEEEEEEHHHEEEECCCCCCCCCHHHHHHCCCCEEEEEEECCCCEE VQIVVNGWVHRIQEENQ EEEEEHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA