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The map label for this gene is yjdC [H]

Identifier: 29144622

GI number: 29144622

Start: 4526166

End: 4526741

Strand: Reverse

Name: yjdC [H]

Synonym: t4373

Alternate gene names: 29144622

Gene position: 4526741-4526166 (Counterclockwise)

Preceding gene: 29144623

Following gene: 29144621

Centisome position: 94.47

GC content: 51.39

Gene sequence:

>576_bases
GTGCAACGTGAAGATATTCTGGGAGAAGCCCTGAAATTACTGGAGACGCAAGGGATAGCCGATACTACGCTGGAAATGGT
GGCGGAGCGCGTAAATCGCCCACTCGACACATTACAGCGTTTCTGGCCAGATAAAGAAGCCATTTTATATGACGCGCTAC
GTTATCTGAGTCAGCAGGTAGATATCTGGCGACGCCAGCTTCTTCTTGATGAGACGTTTTCTGCTGAACAAAAGCTACTG
GCACGCTACAGCGCGCTTTCGGAATGTGTCAGTAATAACCGTTATCCTGGTTGCTTGTTCATTGCCGCCTGTACGTTTTA
TCCCGACCCAACCCATCCTATTCACCAACTGGCTAATCAACAAAAACGCGCGGCACATGATTTTACCCATGGGCTACTGA
CCACGCTGGAAATTGACGATCCGGCGATGGTTGCAAGGCAGATGGAACTGGTGCTGGAAGGTTGTCTCAGCCGAATGCTG
GTCAACCGCAGTCAGGCTGATGTAGATACCGCTCAGCGGTTGGCGGAAGATATTCTGCGTTTTGCACAGTGCCGTCAGGG
TGGAGCGCTCACCTGA

Upstream 100 bases:

>100_bases
GCGAGTCACCGGCTTTATGGACGCCGCCACCTTTAGCGCGCATTTGCACGATCGCCAACCATGAGCGACACTTGCAAAAG
CAAAGACGGAGGAGAATACC

Downstream 100 bases:

>100_bases
CGGGTACTGATTTTATGCATTTTGCCTGAAAAGCAGGCAGTCAGCGCGCTTTTATCACTTTTTTCGTGTAAAGCCGTTGA
CGACCGCGCCCCTTTACGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQVDIWRRQLLLDETFSAEQKLL
ARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQQKRAAHDFTHGLLTTLEIDDPAMVARQMELVLEGCLSRML
VNRSQADVDTAQRLAEDILRFAQCRQGGALT

Sequences:

>Translated_191_residues
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQVDIWRRQLLLDETFSAEQKLL
ARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQQKRAAHDFTHGLLTTLEIDDPAMVARQMELVLEGCLSRML
VNRSQADVDTAQRLAEDILRFAQCRQGGALT
>Mature_191_residues
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQVDIWRRQLLLDETFSAEQKLL
ARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQQKRAAHDFTHGLLTTLEIDDPAMVARQMELVLEGCLSRML
VNRSQADVDTAQRLAEDILRFAQCRQGGALT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=191, Percent_Identity=87.9581151832461, Blast_Score=352, Evalue=7e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21794; Mature: 21794

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQV
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
DIWRRQLLLDETFSAEQKLLARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
QKRAAHDFTHGLLTTLEIDDPAMVARQMELVLEGCLSRMLVNRSQADVDTAQRLAEDILR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FAQCRQGGALT
HHHHHCCCCCC
>Mature Secondary Structure
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQV
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
DIWRRQLLLDETFSAEQKLLARYSALSECVSNNRYPGCLFIAACTFYPDPTHPIHQLANQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
QKRAAHDFTHGLLTTLEIDDPAMVARQMELVLEGCLSRMLVNRSQADVDTAQRLAEDILR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FAQCRQGGALT
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]