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The map label for this gene is int [H]

Identifier: 29144621

GI number: 29144621

Start: 4524556

End: 4525815

Strand: Reverse

Name: int [H]

Synonym: t4371

Alternate gene names: 29144621

Gene position: 4525815-4524556 (Counterclockwise)

Preceding gene: 29144622

Following gene: 29144620

Centisome position: 94.45

GC content: 56.67

Gene sequence:

>1260_bases
ATGTTGACTGACAGCAAGATCCGCGCCGCGAAACCCCTCGCAAAATCCTATAAACTCACTGATGCACAAGGTCTGTACCT
GACGGTATCCACCAGTGGTTCAAAGCTATGGTATTTCCGCTACCGTTTTGAAGGTAAGGAAAATCGTCTGGCCTTCGGCC
CCTATCCGCAGGTTACGCTGGCGGAAGCCCGCGAAAAGCGCGATGCGGCGCGTAAGCTGCTGGTATCCGGCGTTTGCCCT
TCTCTGCCCCGCAAGGCGGAAAAAGCCGCCGTTGACGGTACGCGCACCTTTCAGTACATCGCCACGGCGTGGCACTCCAG
TTGTCTTAAGCTGTGGTCAGAAGACCACGCGGACAAGATCCTGACCTGCCTGAAGCGCTACGTCTTCCCCGATATTGGCG
CAATGGACATTGCAGAGGTTGAAACCCGCCATCTGGCGCAGCTTGTTAAATCCATCGACGATAAGGGCGTGCATGACGTT
GCCGGGCGGGTGCGCCAGCATCTGACCAAAATCATGCGTCATGCCGTACAGCAGGGAACGATTAAATATAATCCGGCTTA
CGATCTGGATGGCGTCGTGACCCCTGTTGTGACCCAACATCACCCCGCCCTGCCCCTGAAACGCCTGCCGGAGCTGCTGG
ACAAGATTAATGGCTACAAAGGGCGGGAACTGACCCGTCTGGCGCTGGAGTTGAATCTGCACGTTTTCCTGCGCTCCAGT
GAGTTACGCCTCGCCCGCTGGGATGAGTTCAACCTGAAAGCTCGTATCTGGACGGTGCCAGCAAAGCGGGAAGCGGTGAA
GAACGTGCGTTTCTCAGAGCGTGGCGCAAAGATGAAGGATGAGCATCTGGTGCCGCTATCTGCGCAGGCTGTCGCCCTGC
TGGAGCAGATAAAGGAAATTACCGGAGAGTCGGTATTTGTTTTTGCGGGTGCTCACTCAATGAACAAGCCGATGAGTGAA
AACACCATCAACAAGGCGCTGCGCGTGATTGGTTACGACACCAAAACCGAAGTCTGCGGTCACGGATTCAGAACGATGGC
CTGTAGCGCCCTGAACGAATCCGCACTGTGGTCTAAGGACGCCATCGAGCGCCAGATGAGCCACAAGGAGCGCAACGGCG
TGCGGGCGGCGTATGTGCATAAGGCGGAGCATCTGGAAGCGCGTATGGAGATGATGCAGTGGTGGTCGGATTATCTCGAC
ATGAGCCGCGAGGGGTACGTCGCGCCGTATATTTATGCGCGGCGGCATAAGGCTGCCTGA

Upstream 100 bases:

>100_bases
GTAAAAATCTTTCCAGATGCGTTTTGATTTATCCCTACGTATCCGGAAAATTAGGGGTCAGGTTGAGGGTTCATTCAGTT
CGATGAACGGAGAGGCCCTC

Downstream 100 bases:

>100_bases
CCCAGCGGCAATATAATTTGTTGATAATGAAAAAGCAGATCCTGATTGAATCCGGATCTGCTTTTTGTATTGAAAGGATT
TAACTTCAATTTTTTGATTG

Product: bacteriophage integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLAEAREKRDAARKLLVSGVCP
SLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKILTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDV
AGRVRQHLTKIMRHAVQQGTIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEITGESVFVFAGAHSMNKPMSE
NTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDAIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLD
MSREGYVAPYIYARRHKAA

Sequences:

>Translated_419_residues
MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLAEAREKRDAARKLLVSGVCP
SLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKILTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDV
AGRVRQHLTKIMRHAVQQGTIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEITGESVFVFAGAHSMNKPMSE
NTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDAIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLD
MSREGYVAPYIYARRHKAA
>Mature_419_residues
MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLAEAREKRDAARKLLVSGVCP
SLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKILTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDV
AGRVRQHLTKIMRHAVQQGTIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEITGESVFVFAGAHSMNKPMSE
NTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDAIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLD
MSREGYVAPYIYARRHKAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=401, Percent_Identity=35.4114713216958, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1788974, Length=410, Percent_Identity=32.4390243902439, Blast_Score=222, Evalue=4e-59,
Organism=Escherichia coli, GI145693166, Length=412, Percent_Identity=34.9514563106796, Blast_Score=211, Evalue=9e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47692; Mature: 47692

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCEEECCCCCCHH
AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
EEECCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHEEEEEEEEEEECC
ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI
CCEEEECCCCCCEEEEEECCHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCHHHCCCHH
AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA
HHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTL
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCEEECCCCCCHH
AEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKI
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
LTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
IKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSS
EEECCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHEEEEEEEEEEECC
ELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI
CCEEEECCCCCCEEEEEECCHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCHHHCCCHH
AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKAA
HHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]