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The map label for this gene is safB [H]

Identifier: 29142938

GI number: 29142938

Start: 2637504

End: 2638244

Strand: Reverse

Name: safB [H]

Synonym: t2559

Alternate gene names: 29142938

Gene position: 2638244-2637504 (Counterclockwise)

Preceding gene: 29142939

Following gene: 29142937

Centisome position: 55.06

GC content: 47.91

Gene sequence:

>741_bases
ATGAAAATTATTAGTTTTGGTGTAATGGCGGCTGTTTTATTCGTCTCTAATTCTATAACTCCTCCAGTGTATGCCGCTGA
GCAGAAATTAAGTTTAAACACTAAATCATTCAGCGTGAAGCTGGGGGCTACACGGGTGATTTATCACGCTGGTACAGTTG
GAGCCACGCTCTCGGTGAGCAACCCGCAGAATTACCCTATTTTGGTTCAGTCTTCAGTCAAAGCAGCAGACAAAAGTTCG
CCTGCTCCTTTTTTGGTGATGCCGCCTCTATTTCGTTTAGAAGCGAACCAGCAGAGTCAACTGCGTATTGTCCGTACTGG
TGGTGACATGCCAACGGATCGTGAGACTTTACAGTGGGTCTGTGTAAAGGCGGTACCACCCGAAAATGAACCGTCGGATA
CACAGGCTAAGGGCGCGACCCTTGACCTCAATTTGTCCATCAACGTCTGTGATAAGCTGATTTTCCGCCCGGATGCCGTG
AAGGGGACGCCGGAAGATGTTGCAGGAAATTTAAGATGGGTGGAGGCGGGCAACAAACTTAAGGTGGAGAACCCCACCCC
GTTTTACATGAATTTAGCCTCCGTCACAGTAGGGGGAAAGCCCATTACAGGGCTTGAGTATATCCCCCCTTTTGCTGACA
AAACACTAAATATGCCAGGTAGTGCCCATGGTGATGTCGAGTGGAGAGTTATTACTGACTTTGGTGGTGAAAGTCATCCG
TTCCACTACGTCCTTAAATAA

Upstream 100 bases:

>100_bases
TACACATAGCGGAGTATCAAGCTTAATAGTAAACAACTTTTATTGCGCTTTATTAAAGCGCAATAAATATCAAGTCATAC
ATTTTTTTATAACTTGTAAT

Downstream 100 bases:

>100_bases
ATCCAGGGGCTTAGCGGCAGAATATGAAGTTCAAACAACCTGCCTTGCTACTGTTTATCGCGGGAGTGGTTCACTGCGCA
AATGCGCACACTTACACATT

Product: periplasmic fimbrial chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKIISFGVMAAVLFVSNSITPPVYAAEQKLSLNTKSFSVKLGATRVIYHAGTVGATLSVSNPQNYPILVQSSVKAADKSS
PAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCVKAVPPENEPSDTQAKGATLDLNLSINVCDKLIFRPDAV
KGTPEDVAGNLRWVEAGNKLKVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGSAHGDVEWRVITDFGGESHP
FHYVLK

Sequences:

>Translated_246_residues
MKIISFGVMAAVLFVSNSITPPVYAAEQKLSLNTKSFSVKLGATRVIYHAGTVGATLSVSNPQNYPILVQSSVKAADKSS
PAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCVKAVPPENEPSDTQAKGATLDLNLSINVCDKLIFRPDAV
KGTPEDVAGNLRWVEAGNKLKVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGSAHGDVEWRVITDFGGESHP
FHYVLK
>Mature_246_residues
MKIISFGVMAAVLFVSNSITPPVYAAEQKLSLNTKSFSVKLGATRVIYHAGTVGATLSVSNPQNYPILVQSSVKAADKSS
PAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCVKAVPPENEPSDTQAKGATLDLNLSINVCDKLIFRPDAV
KGTPEDVAGNLRWVEAGNKLKVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGSAHGDVEWRVITDFGGESHP
FHYVLK

Specific function: Involved in the biogenesis of the AAF/I fimbriae [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789532, Length=202, Percent_Identity=37.1287128712871, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1790771, Length=200, Percent_Identity=35, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1787171, Length=202, Percent_Identity=31.6831683168317, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1786333, Length=216, Percent_Identity=31.0185185185185, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1786743, Length=198, Percent_Identity=30.3030303030303, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI87081806, Length=140, Percent_Identity=32.1428571428571, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786936, Length=155, Percent_Identity=30.9677419354839, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26652; Mature: 26652

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIISFGVMAAVLFVSNSITPPVYAAEQKLSLNTKSFSVKLGATRVIYHAGTVGATLSVS
CEEEHHHHHHHHHHHCCCCCCCEEECCCEEEECCCEEEEEECCEEEEEECCCCCEEEECC
NPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWV
CCCCCCEEEECCCCCCCCCCCCCEEEECCCEEECCCCCCEEEEEEECCCCCCCCCEEEEE
CVKAVPPENEPSDTQAKGATLDLNLSINVCDKLIFRPDAVKGTPEDVAGNLRWVEAGNKL
EEEECCCCCCCCCCCCCCCEEEEEEEHHHHHHHEECCCCCCCCHHHHCCCEEEEECCCEE
KVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGSAHGDVEWRVITDFGGESHP
EECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCC
FHYVLK
EEEEEC
>Mature Secondary Structure
MKIISFGVMAAVLFVSNSITPPVYAAEQKLSLNTKSFSVKLGATRVIYHAGTVGATLSVS
CEEEHHHHHHHHHHHCCCCCCCEEECCCEEEECCCEEEEEECCEEEEEECCCCCEEEECC
NPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWV
CCCCCCEEEECCCCCCCCCCCCCEEEECCCEEECCCCCCEEEEEEECCCCCCCCCEEEEE
CVKAVPPENEPSDTQAKGATLDLNLSINVCDKLIFRPDAVKGTPEDVAGNLRWVEAGNKL
EEEECCCCCCCCCCCCCCCEEEEEEEHHHHHHHEECCCCCCCCHHHHCCCEEEEECCCEE
KVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGSAHGDVEWRVITDFGGESHP
EECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCC
FHYVLK
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7914189 [H]