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The map label for this gene is safC [H]

Identifier: 29142937

GI number: 29142937

Start: 2634970

End: 2637480

Strand: Reverse

Name: safC [H]

Synonym: t2558

Alternate gene names: 29142937

Gene position: 2637480-2634970 (Counterclockwise)

Preceding gene: 29142938

Following gene: 29142936

Centisome position: 55.04

GC content: 54.36

Gene sequence:

>2511_bases
ATGAAGTTCAAACAACCTGCCTTGCTACTGTTTATCGCGGGAGTGGTTCACTGCGCAAATGCGCACACTTACACATTCGA
TGCATCAATGTTGGGCGATGCAGCGAAAGGGGTTGATATGTCGCTCTTTAACCAGGGGGTACAACAGCCAGGGACTTATC
GAGTGGACGTAATGGTGAATGGTAAACGTGTCGACACCCGTGATGTGGTGTTCAAATTAGAAAAGGATGGGCAAGGAACG
CCTTTTCTGGCTTCTTGTTTGACGGTCAGTCAGCTTTCACGCTACGGCGTAAAAACGGAAGATTACCCTCAGTTGTGGAA
AGCAGCAAAGACCCCAGATGAGTGTGCGGATCTGACCGCCATTCCACAGGCTAAAGCGGTACTGGATATCAATAATCAGC
AACTGCAACTGAGTATTCCGCAGTTGGCGTTGCGTCCGGAATTTAAGGGGATCGCTCCAGAAGATCTTTGGGATGATGGT
ATTCCGGCGTTTCTGATGAACTACAGTGCGAGGACAACGCAGACGGATTACAAAATGGATATGGTGGGGCGTGACAACTC
TTCCTGGGTACAACTGCAACCGGGAATCAATATAGGTGCGTGGCGTGTCCGCAATGCGACCAGCTGGCAGCGGAGTAGTC
AACTGTCGGGGAAGTGGCAGGCAGCATATACCTATGCTGAGCGTGGACTGTACTCACTAAAAAGTCGTCTGACTCTGGGG
CAAAAGACTTCGCAGGGGGAGATATTTGATAGTGTGCCATTTACCGGTGTGATGTTGGCATCGGATGACAACATGGTGCC
CTACAGTGAGCGGCAGTTTGCTCCGGTAGTGCGTGGGATTGCCCGCACGCAGGCTCGGGTGGAGGTCAAACAGAATGGTT
ACACCATTTACAACACCACCGTGGCGCCCGGACCGTTTGCACTGCGGGATCTGTCGGTAACAGACAGTAGTGGTGATCTG
CATGTCACCGTGTGGGAGGCCGATGGCAGTACACAAATGTTTGTGGTGCCGTATCAGACCCCGGCGATAGCACTGCACCA
GGGATATTTGAAGTACAGCCTGTTGGCGGGCCGATACCGATCGTCAGACTCTGCAACGGATAAGGCGCAGATCGCGCAGG
CTACGTTGATGTATGGTCTGCCGTGGAATCTCACTGCATATGGCGGTATACAGAGTGCAACGCACTATCAAGCTGCATCG
CTTGGTTTGGGAGGATCTCTCGGGCGGTGGGGGAGTTTATCTGTCGATGGAAGCGACACACACAGTCAGCGTCAGGGGGA
AGCGGTACAGCAAGGAGCCTCCTGGCGACTGCGTTACAGCAACCAGCTGACTGCGACGGGGACAAATTTGTTTCTGACGA
GATGGCAATATGCCTCGCAGGGCTATAACACCCTATCCGATGTGCTCGACAGTTATCGACATAATGGCAACCGTCTATGG
TCGTGGCGGGAAAATTTGCAGCCGAGCTCACGTACCACCCTGATGTTGAGTCAGTCATGGGGGAGGCATTTGGGCAATCT
GAGTTTAATCGGTTCCCGTACCGACTGGCGTAATCGCCCCGGTCATGATGACAGCTACGGACTGAGTTGGGGAACCTCTA
TCGGAGGGGGCTCGCTGTCATTGAACTGGAATCAAAACAGAACGCTGTGGCGCAATGGCGGGCACCGTAAAGAGAACATA
ACCAGCCTGTGGTTCAGTATGCCATTAAGCCGCTGGACGGGGAATAATGTAAGTGCTAGTTGGCAGATGACTTCACCATC
ACACGGTGGTCAGACGCAACAAGTGGGGGTCAACGGAGAGGCATTCAGTCAGCAACTGGATTGGGAGGTGCGTCAGAGTT
ACCGTGCCGATGCCCCGCCAGGTGGTGGTAATAACAGCGCATTGCACTTGGCATGGAATGGGGCTTACGGCCTGTTAGGT
GGTGACTATAGCTACAGCCGGGCGATGCGCCAGATGGGAGTCAATATCGCGGGAGGTATAGTTATCCACCATCATGGTGT
GACGCTGGGGCAACCTTTGCAAGGCTCAGTGGCGCTGGTTGAAGCGCCAGGGGCCTCGGGGGTGCCAGTTGGCCCCTGGC
CTGGCGTTAAGACGGATTTTCGTGGCGACACCACAGTGGGCAACCTGAGCGTCTATCAGGAGAATACAGTCAGCCTCGAT
CCGTCGCAACTACCGGATGACGCAGAGGTCACACAAACCGATGTGCGCGTGGTGCCAACCGAAGGGGCGGTGGTGGAAGC
GAAGTTTCACACTCGCATCGGGGCCAGGGCACTGATGACGCTGAAACGGGAAGATGGTAGCGCCATTCCTTTCGGGGCGC
AGGTTATAGTCAATGGGCAGGATGGCAGCGCTGATCTGGTGGATACTGATAGCCAGGTTTATCTCACTGGTCTGGCGGAT
AAGGGCGAACTGACGGTGAAATGGGGAGCACAGCAATGTCGGGTTAACTACCACCTACCTGCCCACAAGGGAATCGCGGG
CTTGTATCAAATGAGCGGTCTCTGCAGATAG

Upstream 100 bases:

>100_bases
CCCATGGTGATGTCGAGTGGAGAGTTATTACTGACTTTGGTGGTGAAAGTCATCCGTTCCACTACGTCCTTAAATAAATC
CAGGGGCTTAGCGGCAGAAT

Downstream 100 bases:

>100_bases
CCGATTCTGAAGGAGAGAATAATGTGGATGAAAATACAGCGAGTGAAAACGGTTATCTATAGCGTAAGCTTACTGGTCGC
TGCCAGTAGCTTGGTGCCGA

Product: outer-membrane fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 836; Mature: 836

Protein sequence:

>836_residues
MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT
PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG
IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL
HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAS
LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW
SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGGHRKENI
TSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLG
GDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD
PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLAD
KGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR

Sequences:

>Translated_836_residues
MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT
PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG
IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL
HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAS
LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW
SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGGHRKENI
TSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLG
GDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD
PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLAD
KGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
>Mature_836_residues
MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT
PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG
IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL
HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAS
LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW
SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGGHRKENI
TSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLG
GDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD
PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLAD
KGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR

Specific function: Involved in the export and assembly of AFA-III afimbrial adhesin subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=868, Percent_Identity=36.405529953917, Blast_Score=498, Evalue=1e-142,
Organism=Escherichia coli, GI1787172, Length=861, Percent_Identity=34.7270615563298, Blast_Score=480, Evalue=1e-136,
Organism=Escherichia coli, GI1789533, Length=847, Percent_Identity=35.655253837072, Blast_Score=457, Evalue=1e-130,
Organism=Escherichia coli, GI1786744, Length=846, Percent_Identity=35.2245862884161, Blast_Score=441, Evalue=1e-125,
Organism=Escherichia coli, GI1786332, Length=864, Percent_Identity=28.125, Blast_Score=310, Evalue=2e-85,
Organism=Escherichia coli, GI1788427, Length=744, Percent_Identity=29.4354838709677, Blast_Score=296, Evalue=4e-81,
Organism=Escherichia coli, GI87081778, Length=837, Percent_Identity=26.7622461170848, Blast_Score=233, Evalue=4e-62,
Organism=Escherichia coli, GI1789610, Length=812, Percent_Identity=23.7684729064039, Blast_Score=147, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91420; Mature: 91420

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
CCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCHHCCCCHHHHHHHHCCCCCEEEEEEEC
GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHCCCC
IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
CCCCEEEEEECCCEEEEECCCEEECCCCCCCCCHHHCCCCCCHHHHCCCCCCCCCCEEEE
MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
EECCCCCCEEEECCCCCCCEEEECCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCC
QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
CCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEEE
VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
ECCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEHHCHHEEEEHHCCCC
SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
CCCCCCHHHHHHHHHEEECCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCCC
HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW
CHHHHCHHHHCCCCEEEEECCEEEECCCEEEEEEEHHHHCCHHHHHHHHHHHHCCCCEEE
SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
EHHHCCCCCCCEEEEEECHHCHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEE
LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
EEECCCCCEECCCCCCCHHHHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCCEEECCCHH
AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
HHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHCCEEECEE
VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD
EEEECCCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECEEEEEECCCEECC
PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
HHHCCCCCCEEECCEEEEECCCCEEEEEHHHHHCCEEEEEEECCCCCCCCCCCEEEEECC
DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
CCCCCEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
CCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCHHCCCCHHHHHHHHCCCCCEEEEEEEC
GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHCCCC
IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
CCCCEEEEEECCCEEEEECCCEEECCCCCCCCCHHHCCCCCCHHHHCCCCCCCCCCEEEE
MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
EECCCCCCEEEECCCCCCCEEEECCCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCC
QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
CCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEEE
VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
ECCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEHHCHHEEEEHHCCCC
SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
CCCCCCHHHHHHHHHEEECCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCCC
HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW
CHHHHCHHHHCCCCEEEEECCEEEECCCEEEEEEEHHHHCCHHHHHHHHHHHHCCCCEEE
SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
EHHHCCCCCCCEEEEEECHHCHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEE
LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
EEECCCCCEECCCCCCCHHHHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCCEEECCCHH
AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
HHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHCCEEECEE
VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD
EEEECCCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECEEEEEECCCEECC
PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
HHHCCCCCCEEECCEEEEECCCCEEEEEHHHHHCCEEEEEEECCCCCCCCCCCEEEEECC
DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
CCCCCEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8002584 [H]