Click here to switch to the map view.

The map label for this gene is sscB

Identifier: 29141732

GI number: 29141732

Start: 1341931

End: 1342365

Strand: Direct

Name: sscB

Synonym: t1271

Alternate gene names: NA

Gene position: 1341931-1342365 (Clockwise)

Preceding gene: 29141731

Following gene: 29141733

Centisome position: 28.0

GC content: 48.05

Gene sequence:

>435_bases
ATGATGATGAAAGAAGATCAGAAAAATAAAATACCCGAAGACATTCTGAAACAGCTATTATCCGTTGATCCGGAAACCGT
TTATGCCAGTGGTTACGCCTCATGGCAGGAGGGGGATTATTCGCGCGCCGTAATCGATTTTAGCTGGCTGGTGATGGCCC
AGCCATGGAGTTGGCGTGCCCATATTGCATTGGCTGGCACCTGGATGATGCTTAAAGAATACACGACGGCCATTAATTTC
TATGGACATGCCTTGATGCTGGATGCCAGCCATCCAGAACCGGTTTACCAAACGGGCGTCTGTCTCAAAATGATGGGGGA
ACCCGGGTTGGCGAGAGAGGCTTTTCAAACCGCAATCAAGATGAGCTATGCGGATGCCTCATGGAGTGAGATTCGCCAGA
ATGCGCAAAAAATGGTTGATACTCTTATTGCTTAA

Upstream 100 bases:

>100_bases
TAACTGGACAATTTTATCCGCCGAGCATCTTATCCAGCGACGTTTTTAAATGACCTTCCTGGCGTAAATCATTATCACGT
GAAAATAACAATCAATAGGT

Downstream 100 bases:

>100_bases
ATAACAGAACGAAATATGAAAATTCATATTCCGTCAGCGGCAAGCAATATAGTCGATGGTAATAGTCCTCCTTCCGGTAT
ACAAGCGAAGGAGGCATCGT

Product: pathogenicity island protein

Products: NA

Alternate protein names: Type III Secretion Low Calcium Response Chaperone LcrH/SycD; Pathogenicity Island Protein

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF
YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQKMVDTLIA

Sequences:

>Translated_144_residues
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF
YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQKMVDTLIA
>Mature_144_residues
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF
YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQKMVDTLIA

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16390; Mature: 16390

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
7.6 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
7.6 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA
CCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEEEEHEEEEEECCCCCEE
HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK
EEEEHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHCHHEEECCCCCHHHHHHHHHHH
MSYADASWSEIRQNAQKMVDTLIA
HHCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA
CCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEEEEHEEEEEECCCCCEE
HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK
EEEEHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHCHHEEECCCCCHHHHHHHHHHH
MSYADASWSEIRQNAQKMVDTLIA
HHCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA