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The map label for this gene is sseF

Identifier: 29141733

GI number: 29141733

Start: 1342381

End: 1343163

Strand: Direct

Name: sseF

Synonym: t1272

Alternate gene names: NA

Gene position: 1342381-1343163 (Clockwise)

Preceding gene: 29141732

Following gene: 29141734

Centisome position: 28.01

GC content: 48.91

Gene sequence:

>783_bases
ATGAAAATTCATATTCCGTCAGCGGCAAGCAATATAGTCGATGGTAATAGTCCTCCTTCCGGTATACAAGCGAAGGAGGC
ATCGTTTCCTCCCCCTGAAATTCCAGCCCCTGGCACCCCTACAGTTCCTGTGGTGCTTACGCCTGAACAAATAAGGCAGC
AGAGGGATTATGCTATACATTTTATGCAATACACGATTCGTGCGCTGGGGGCGACAGTCGTGTTTGGATTATCGGTTGCT
GCAGCGGTAATTTCTGGCGGAGCAGGATTACCCATTGCTATTCTTGCGGGGGCGGCGCTCGTGATTGCTATTGGGGATGC
TTGCTGTGCGTATCATAATTATCAATTGATATGTCAGCAAAAGGCGCCGTTACAAACCGCCAGTGATAGCGTTGCTCTTG
TGGTCAGTGCGCTGGCCTTAAAATGCGGGGCAAGTCTTAACTGCGCTAACACCCTTGCTAATTGTCTTTCTTTATTAATA
CGTTCAGGAATCGCTATTTCTATGTTGGTTTTACCCCTACAGTTTCCACTGCCCGCGGCTGAAAATATAGCGGCCTCTTT
GGACATGGGGAGTGTAATTACCTCCGTTAGCCTGACGGCGATAGGTGCGGTACTGGATTATTGCCTTGCCCGCCCCTCTG
GCGACGATCAGGAAAATTCTGTTGATGAACTTCATGCCGATCCCAGTGTGTTATTGGCGGAACAAATGGCATTGCTCTGT
CAATCTGCTACTACACCTGCATTAATGGACAGTTCTGGTCATACATCTCGGGGAGAACCATGA

Upstream 100 bases:

>100_bases
CGCAATCAAGATGAGCTATGCGGATGCCTCATGGAGTGAGATTCGCCAGAATGCGCAAAAAATGGTTGATACTCTTATTG
CTTAAATAACAGAACGAAAT

Downstream 100 bases:

>100_bases
AACCTGTTAGCCCAAATGCTCAGGTCGGAGGGCAACGTCCTGTTAACGCGCCTGAGGAATCACCTCCATGTCCCTCATTG
CCACATCCGGAAACCAATAT

Product: pathogenicity island effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKIHIPSAASNIVDGNSPPSGIQAKEASFPPPEIPAPGTPTVPVVLTPEQIRQQRDYAIHFMQYTIRALGATVVFGLSVA
AAVISGGAGLPIAILAGAALVIAIGDACCAYHNYQLICQQKAPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLI
RSGIAISMLVLPLQFPLPAAENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQENSVDELHADPSVLLAEQMALLC
QSATTPALMDSSGHTSRGEP

Sequences:

>Translated_260_residues
MKIHIPSAASNIVDGNSPPSGIQAKEASFPPPEIPAPGTPTVPVVLTPEQIRQQRDYAIHFMQYTIRALGATVVFGLSVA
AAVISGGAGLPIAILAGAALVIAIGDACCAYHNYQLICQQKAPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLI
RSGIAISMLVLPLQFPLPAAENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQENSVDELHADPSVLLAEQMALLC
QSATTPALMDSSGHTSRGEP
>Mature_260_residues
MKIHIPSAASNIVDGNSPPSGIQAKEASFPPPEIPAPGTPTVPVVLTPEQIRQQRDYAIHFMQYTIRALGATVVFGLSVA
AAVISGGAGLPIAILAGAALVIAIGDACCAYHNYQLICQQKAPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLI
RSGIAISMLVLPLQFPLPAAENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQENSVDELHADPSVLLAEQMALLC
QSATTPALMDSSGHTSRGEP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26636; Mature: 26636

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIHIPSAASNIVDGNSPPSGIQAKEASFPPPEIPAPGTPTVPVVLTPEQIRQQRDYAIH
CEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHH
FMQYTIRALGATVVFGLSVAAAVISGGAGLPIAILAGAALVIAIGDACCAYHNYQLICQQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHHHHHHHHCCHHEEECC
KAPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLIRSGIAISMLVLPLQFPLPAA
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCH
ENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQENSVDELHADPSVLLAEQMALLC
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
QSATTPALMDSSGHTSRGEP
HCCCCCCEECCCCCCCCCCC
>Mature Secondary Structure
MKIHIPSAASNIVDGNSPPSGIQAKEASFPPPEIPAPGTPTVPVVLTPEQIRQQRDYAIH
CEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHH
FMQYTIRALGATVVFGLSVAAAVISGGAGLPIAILAGAALVIAIGDACCAYHNYQLICQQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHHHHHHHHCCHHEEECC
KAPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLIRSGIAISMLVLPLQFPLPAA
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCH
ENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQENSVDELHADPSVLLAEQMALLC
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
QSATTPALMDSSGHTSRGEP
HCCCCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA