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The map label for this gene is sseE

Identifier: 29141731

GI number: 29141731

Start: 1341463

End: 1341879

Strand: Direct

Name: sseE

Synonym: t1270

Alternate gene names: NA

Gene position: 1341463-1341879 (Clockwise)

Preceding gene: 29141730

Following gene: 29141732

Centisome position: 27.99

GC content: 44.84

Gene sequence:

>417_bases
ATGGTGCAAGAAATAGAGCAATGGTTGCGTCGGCATCAGGTGTTTACTGAGCCTGCATATTTAGGGGAGACCGCCATATT
ACTTGGGCAGCAGTTTATATTATCGCCTTACCTGGTGATCTATCGTATTGAGGCAAAAGAAATGATTATTTGTGAGTTCA
GGCGCCTGACGCCCGGGCAACCTCGACCACAGCAATTGTTTCACTTACTGGGACTTTTACGCGGGATATTTGTGCATCAC
CCGCAGTTAACATGTTTAAAGATGTTGATAATCACCGACGTTCTGGATGAAAAAAAAGCTATGCTACGCAGGAAATTATT
GCGCATCCTGACAGTAATGGGAGCGACCTTTACACAGCTTGATGGCGATAACTGGACAATTTTATCCGCCGAGCATCTTA
TCCAGCGACGTTTTTAA

Upstream 100 bases:

>100_bases
TTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTTACGGTTCTTGCTGAAATACTC
CGGGCATTAACGAGGTAAAT

Downstream 100 bases:

>100_bases
ATGACCTTCCTGGCGTAAATCATTATCACGTGAAAATAACAATCAATAGGTATGATGATGAAAGAAGATCAGAAAAATAA
AATACCCGAAGACATTCTGA

Product: pathogenicity island effector protein

Products: NA

Alternate protein names: Secreted Effector Protein; Pathogenicity Island Effector Protein

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHH
PQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQLDGDNWTILSAEHLIQRRF

Sequences:

>Translated_138_residues
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHH
PQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQLDGDNWTILSAEHLIQRRF
>Mature_138_residues
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHH
PQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQLDGDNWTILSAEHLIQRRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16281; Mature: 16281

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQ
CHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHCHHHEEEEECCHHHHHHHHHHCCCCC
PRPQQLFHLLGLLRGIFVHHPQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
DGDNWTILSAEHLIQRRF
CCCCEEEEEHHHHHHHCC
>Mature Secondary Structure
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQ
CHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHCHHHEEEEECCHHHHHHHHHHCCCCC
PRPQQLFHLLGLLRGIFVHHPQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
DGDNWTILSAEHLIQRRF
CCCCEEEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA