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The map label for this gene is rfc

Identifier: 29141676

GI number: 29141676

Start: 1278530

End: 1279753

Strand: Reverse

Name: rfc

Synonym: t1212

Alternate gene names: 29141676

Gene position: 1279753-1278530 (Counterclockwise)

Preceding gene: 29141691

Following gene: 29141673

Centisome position: 26.71

GC content: 33.42

Gene sequence:

>1224_bases
ATGCTTATAATTTCATACATTGCATTATGCTTATTATTTATAGTTTATCTCTATACTCTTTCCGTAAGAATTGAGGGAAA
AATAATAAATGTAATGGTCCCATACCTGATAATAACAGTCCCTACACTGTACGTGTTTGAAGGTATATTTGTATACCTCT
CAGAGGTGCAGAATTATACAGTGGAATATTTGTTTTTCTATACTTGCTATATAACATACATAGCATCATTTGTTATTTCT
TATCTTTACACACAAAGAAAACCCATATACAACAAATCAAACACGAAAAATAAACCAAGGTATGTGTTTACTTCATTGTT
ATTCACCTTCCTTGCTTTTATCATTTACCTTCCAGTGTTGATGGAGTTCAGAGAGTATATACTTAGCCCAAGAAGAATAT
ACGAATTAACCAGAACAGGGTATGGTATATACTTCTATCCTTCATTAATGTTTTCTCTTGTCGCTTCTATTTGCGCGTTC
TTTACATACAAAAAATCAAAGTTATTTTGTATTTCCATAGTTTTATTTAACTGTATACTTATTTTCTTGCATGGTAACAA
AGGACCAATATTTAGTATATTTATAGCATTCATCCTTTACCTTTCATATATTGAAAATAAAAAAATTAAATTTATGTTCC
TGGTAAAATCGTTTGCTGTTATAGCAGTCATTGTAACGGCATTCTTTGCATATACGTTTACTGATGGGAATCCGATAGAA
AATATGGCTAATTACTCGGATTATACCCGTAATGCTGTTCTTGTTGCTTCCTCAAACTTTGACTTTATGTACGGAAAATT
ACTAATGGAGAGCGAGGTTTACTCGAGGATTCCGAGGGCTATTTGGCCTGATAAGCCTGAAGATTTTGGCGCATTGTATC
TGGCAAAAGTATTTTTCCCTGATGCATTCTACAGAAATCAGGGCGCTCCTGCTTTCGGGTATGGTGAACTATACGCAGAT
TTCGGGCTTTTTACACCAGTTTGGTTAGTTATATCTGGAGTATTTAAAGGCGTCCTAGCTAAGTATTTCTCCAATAAAAC
TCAGGAAACAAAGTCAGCGCATTATTTCATAATGTTCCTATTTTGCATTGGAATAAGTGTGATTCCTGTTAGCATGGGAT
GGTTGTTCCCTGAGCATTTGATGATTGCTTTTATGGTATACATTGCATCTTCCTTTGTTTTTTCAGAGCATATAAGATTC
GTTTTACTAAGAAACAATAAATAA

Upstream 100 bases:

>100_bases
TACCAGATTCAGAATATCTTGCCAGAAGATTTTCCGTACCACACCTTATTTGCCTGATGGTAATATTTTTAATACTAAGC
ATTTTTTCTAAAGGCTCTAT

Downstream 100 bases:

>100_bases
GTTATACGGCGGCAATGCCGCCGTTTTATTTGGCTCTGAAGCGTAAAAATTGTTCCTGTAAAGCTTGTTGGGTTTGCTGA
GCCATCATTACCAACGTAAA

Product: O-antigen polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLIISYIALCLLFIVYLYTLSVRIEGKIINVMVPYLIITVPTLYVFEGIFVYLSEVQNYTVEYLFFYTCYITYIASFVIS
YLYTQRKPIYNKSNTKNKPRYVFTSLLFTFLAFIIYLPVLMEFREYILSPRRIYELTRTGYGIYFYPSLMFSLVASICAF
FTYKKSKLFCISIVLFNCILIFLHGNKGPIFSIFIAFILYLSYIENKKIKFMFLVKSFAVIAVIVTAFFAYTFTDGNPIE
NMANYSDYTRNAVLVASSNFDFMYGKLLMESEVYSRIPRAIWPDKPEDFGALYLAKVFFPDAFYRNQGAPAFGYGELYAD
FGLFTPVWLVISGVFKGVLAKYFSNKTQETKSAHYFIMFLFCIGISVIPVSMGWLFPEHLMIAFMVYIASSFVFSEHIRF
VLLRNNK

Sequences:

>Translated_407_residues
MLIISYIALCLLFIVYLYTLSVRIEGKIINVMVPYLIITVPTLYVFEGIFVYLSEVQNYTVEYLFFYTCYITYIASFVIS
YLYTQRKPIYNKSNTKNKPRYVFTSLLFTFLAFIIYLPVLMEFREYILSPRRIYELTRTGYGIYFYPSLMFSLVASICAF
FTYKKSKLFCISIVLFNCILIFLHGNKGPIFSIFIAFILYLSYIENKKIKFMFLVKSFAVIAVIVTAFFAYTFTDGNPIE
NMANYSDYTRNAVLVASSNFDFMYGKLLMESEVYSRIPRAIWPDKPEDFGALYLAKVFFPDAFYRNQGAPAFGYGELYAD
FGLFTPVWLVISGVFKGVLAKYFSNKTQETKSAHYFIMFLFCIGISVIPVSMGWLFPEHLMIAFMVYIASSFVFSEHIRF
VLLRNNK
>Mature_407_residues
MLIISYIALCLLFIVYLYTLSVRIEGKIINVMVPYLIITVPTLYVFEGIFVYLSEVQNYTVEYLFFYTCYITYIASFVIS
YLYTQRKPIYNKSNTKNKPRYVFTSLLFTFLAFIIYLPVLMEFREYILSPRRIYELTRTGYGIYFYPSLMFSLVASICAF
FTYKKSKLFCISIVLFNCILIFLHGNKGPIFSIFIAFILYLSYIENKKIKFMFLVKSFAVIAVIVTAFFAYTFTDGNPIE
NMANYSDYTRNAVLVASSNFDFMYGKLLMESEVYSRIPRAIWPDKPEDFGALYLAKVFFPDAFYRNQGAPAFGYGELYAD
FGLFTPVWLVISGVFKGVLAKYFSNKTQETKSAHYFIMFLFCIGISVIPVSMGWLFPEHLMIAFMVYIASSFVFSEHIRF
VLLRNNK

Specific function: May link the O-antigen tetrasaccharide units into long chains, giving rise to typical smooth LPS

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RFC_SALTI (P0A236)

Other databases:

- EMBL:   AL627271
- EMBL:   AE014613
- RefSeq:   NP_456180.1
- RefSeq:   NP_805018.1
- GeneID:   1070630
- GeneID:   1248150
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t1212
- KEGG:   sty:STY1779
- HOGENOM:   HBG673902
- OMA:   YFELARR
- ProtClustDB:   CLSK894180
- BioCyc:   SENT209261:T1212-MONOMER
- BioCyc:   SENT220341:STY1779-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47462; Mature: 47462

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe28afdc)-; HASH(0xcabb138)-; HASH(0xe3073fc)-; HASH(0xcae24d4)-; HASH(0xe6bc168)-; HASH(0xdcacd58)-; HASH(0xd918354)-; HASH(0xe3007ec)-; HASH(0xd114c34)-; HASH(0xdddc220)-;

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIISYIALCLLFIVYLYTLSVRIEGKIINVMVPYLIITVPTLYVFEGIFVYLSEVQNYT
CHHHHHHHHHHHHHHHHHHHHEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEYLFFYTCYITYIASFVISYLYTQRKPIYNKSNTKNKPRYVFTSLLFTFLAFIIYLPVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MEFREYILSPRRIYELTRTGYGIYFYPSLMFSLVASICAFFTYKKSKLFCISIVLFNCIL
HHHHHHHHCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IFLHGNKGPIFSIFIAFILYLSYIENKKIKFMFLVKSFAVIAVIVTAFFAYTFTDGNPIE
HHEECCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
NMANYSDYTRNAVLVASSNFDFMYGKLLMESEVYSRIPRAIWPDKPEDFGALYLAKVFFP
HHHCCCHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHCC
DAFYRNQGAPAFGYGELYADFGLFTPVWLVISGVFKGVLAKYFSNKTQETKSAHYFIMFL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
FCIGISVIPVSMGWLFPEHLMIAFMVYIASSFVFSEHIRFVLLRNNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCH
>Mature Secondary Structure
MLIISYIALCLLFIVYLYTLSVRIEGKIINVMVPYLIITVPTLYVFEGIFVYLSEVQNYT
CHHHHHHHHHHHHHHHHHHHHEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEYLFFYTCYITYIASFVISYLYTQRKPIYNKSNTKNKPRYVFTSLLFTFLAFIIYLPVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MEFREYILSPRRIYELTRTGYGIYFYPSLMFSLVASICAFFTYKKSKLFCISIVLFNCIL
HHHHHHHHCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IFLHGNKGPIFSIFIAFILYLSYIENKKIKFMFLVKSFAVIAVIVTAFFAYTFTDGNPIE
HHEECCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
NMANYSDYTRNAVLVASSNFDFMYGKLLMESEVYSRIPRAIWPDKPEDFGALYLAKVFFP
HHHCCCHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHCC
DAFYRNQGAPAFGYGELYADFGLFTPVWLVISGVFKGVLAKYFSNKTQETKSAHYFIMFL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
FCIGISVIPVSMGWLFPEHLMIAFMVYIASSFVFSEHIRFVLLRNNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504