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The map label for this gene is yvbU [H]

Identifier: 29141098

GI number: 29141098

Start: 659638

End: 660516

Strand: Reverse

Name: yvbU [H]

Synonym: t0583

Alternate gene names: 29141098

Gene position: 660516-659638 (Counterclockwise)

Preceding gene: 29141100

Following gene: 29141095

Centisome position: 13.78

GC content: 47.55

Gene sequence:

>879_bases
ATGACGCTAACCCAAATCCATGCCCTGCTTGCCGTACTGGAGTACGGCGGATTTACCGAGGCCAGCAAACGGCTATACAT
GACGCAATCCGCCGTCAGCCAGGCCATCTCCGCGCTTGAGGAGGAGCTCGGCGTTGACATATTGATTCGTGAGCGTCGTA
AAGAGATCGAGCTTACCGCCGCCGGTAGCCGCATCGTCAGGCACTTACGCGCGATCCAGCGCGACGTCAACGCGGTAAAA
GAGATTGTCGAACAAGAAAAAAAGAACCCGGCCCGTACGCTACGGATTGGCTGTTTTCCCAGCGCCTGCGCCTGCATTTT
ACCCGGCGTCATTCGCTATTTTGAAAGCCATCATCCAAATGTAAAAATTATCCCCTATGAAGAGAACAGTACGGCTATTA
TTGATTCGCTGCAGGACGGAAGTATTGATGCCGGTTTCGTTCCTTTTCCGGTCAACGGTATGTATTGCGTCCCCATTTAC
CGGGATAAATTCACCGTAGTGGTGCCTGAAAATCATCCCCTGGCGGCCAATAGTACAGTAACGGTCGAAGAACTGATGGA
CGAACCACTTATTGTCAGTAAAGGTCGTTATGAATTAAGTATTATGGCGTTGTTTAAAGAAAAGGGTATTGAACCGATAT
TTAAATATGAATTTAACCATCCCGATACTGCGCTGAATTTTATTCGCCAGGGATTAGGTATCGCCTTATTGCCAGAATTA
ACCTTAAAAGCCACGACAGGAAAATTATGCTCCGTGGCGCTGGAACCCACCTTTTATCGACAAATTTCACTGTTAGCAAA
AGAACCGCCGGTAGAAGGAAGCCCGCTATTTTTATTACAAAAATGTATGGAAACACTGACCGATGAGGGTTTGCTATAA

Upstream 100 bases:

>100_bases
GGTGCGTCAAAATGTGATGTATTCGATAGAATCGCAGTATAAACAAGTGCACTTTATTAGAAAAATTAATCGTTTTAATT
ATATTGATTAGGTTTTACTA

Downstream 100 bases:

>100_bases
AACAACACCGCCTGATGACATTGCGTTTATCAGACTTACGCTGGCAAACGTTGCGCCAGGCCGGATGAGGCGTTTATGTC
CTCATCCGGCGCTTCACTTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELGVDILIRERRKEIELTAAGSRIVRHLRAIQRDVNAVK
EIVEQEKKNPARTLRIGCFPSACACILPGVIRYFESHHPNVKIIPYEENSTAIIDSLQDGSIDAGFVPFPVNGMYCVPIY
RDKFTVVVPENHPLAANSTVTVEELMDEPLIVSKGRYELSIMALFKEKGIEPIFKYEFNHPDTALNFIRQGLGIALLPEL
TLKATTGKLCSVALEPTFYRQISLLAKEPPVEGSPLFLLQKCMETLTDEGLL

Sequences:

>Translated_292_residues
MTLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELGVDILIRERRKEIELTAAGSRIVRHLRAIQRDVNAVK
EIVEQEKKNPARTLRIGCFPSACACILPGVIRYFESHHPNVKIIPYEENSTAIIDSLQDGSIDAGFVPFPVNGMYCVPIY
RDKFTVVVPENHPLAANSTVTVEELMDEPLIVSKGRYELSIMALFKEKGIEPIFKYEFNHPDTALNFIRQGLGIALLPEL
TLKATTGKLCSVALEPTFYRQISLLAKEPPVEGSPLFLLQKCMETLTDEGLL
>Mature_291_residues
TLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELGVDILIRERRKEIELTAAGSRIVRHLRAIQRDVNAVKE
IVEQEKKNPARTLRIGCFPSACACILPGVIRYFESHHPNVKIIPYEENSTAIIDSLQDGSIDAGFVPFPVNGMYCVPIYR
DKFTVVVPENHPLAANSTVTVEELMDEPLIVSKGRYELSIMALFKEKGIEPIFKYEFNHPDTALNFIRQGLGIALLPELT
LKATTGKLCSVALEPTFYRQISLLAKEPPVEGSPLFLLQKCMETLTDEGLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=25.6, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787879, Length=246, Percent_Identity=30.0813008130081, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787806, Length=250, Percent_Identity=25.6, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790399, Length=283, Percent_Identity=25.7950530035336, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=28.9256198347107, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788748, Length=273, Percent_Identity=25.2747252747253, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI157672245, Length=278, Percent_Identity=27.6978417266187, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788887, Length=260, Percent_Identity=27.3076923076923, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693105, Length=275, Percent_Identity=25.8181818181818, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787601, Length=194, Percent_Identity=28.8659793814433, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788296, Length=228, Percent_Identity=25.4385964912281, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788481, Length=268, Percent_Identity=27.9850746268657, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081904, Length=195, Percent_Identity=25.1282051282051, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789639, Length=260, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=247, Percent_Identity=23.0769230769231, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=21.9123505976096, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787589, Length=121, Percent_Identity=31.404958677686, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32532; Mature: 32401

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELGVDILIRERRKEIELTA
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHEEEEH
AGSRIVRHLRAIQRDVNAVKEIVEQEKKNPARTLRIGCFPSACACILPGVIRYFESHHPN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
VKIIPYEENSTAIIDSLQDGSIDAGFVPFPVNGMYCVPIYRDKFTVVVPENHPLAANSTV
EEEEEECCCCCEEEECCCCCCCCCCEEECCCCCEEEEEEECCEEEEEECCCCCCCCCCEE
TVEELMDEPLIVSKGRYELSIMALFKEKGIEPIFKYEFNHPDTALNFIRQGLGIALLPEL
EHHHHHCCCEEEECCCEEEHHEEEHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEECCCC
TLKATTGKLCSVALEPTFYRQISLLAKEPPVEGSPLFLLQKCMETLTDEGLL
EEEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELGVDILIRERRKEIELTA
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHEEEEH
AGSRIVRHLRAIQRDVNAVKEIVEQEKKNPARTLRIGCFPSACACILPGVIRYFESHHPN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
VKIIPYEENSTAIIDSLQDGSIDAGFVPFPVNGMYCVPIYRDKFTVVVPENHPLAANSTV
EEEEEECCCCCEEEECCCCCCCCCCEEECCCCCEEEEEEECCEEEEEECCCCCCCCCCEE
TVEELMDEPLIVSKGRYELSIMALFKEKGIEPIFKYEFNHPDTALNFIRQGLGIALLPEL
EHHHHHCCCEEEECCCEEEHHEEEHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEECCCC
TLKATTGKLCSVALEPTFYRQISLLAKEPPVEGSPLFLLQKCMETLTDEGLL
EEEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]