Click here to switch to the map view.

The map label for this gene is yvoA [H]

Identifier: 28377445

GI number: 28377445

Start: 518802

End: 519512

Strand: Direct

Name: yvoA [H]

Synonym: lp_0563

Alternate gene names: 28377445

Gene position: 518802-519512 (Clockwise)

Preceding gene: 28377444

Following gene: 28377447

Centisome position: 15.68

GC content: 49.09

Gene sequence:

>711_bases
ATGAGTACCATGAGTTCGCCAATTTATATTCAAATCCACAACCAAATTAAGCAGGCGATTGAAGCAGGTCGGTGGGCCGT
TGGTGACCGGATTCCGTCTGAACGGGAGCTGGCTACACAGTTCGATGTTAGTCGGATGACCCTTCGACAAGCAATCCAGA
CATTGGTTGACGAAGGAATATTAGAGCGGCGAGTCGGTGCCGGCACGTTTGTCGCGAATCAGAAGGTCCAAGAAAAAATG
TCCGGTGTCACCAGTTTTACTGATCTAATGCTGGCCCAGGGTAAGGTCCCATCAAGTAAGACGATTTCATATCACGTGAC
GAGCCCGTCGCTATCTGAGAGCGAAAAGTTGGCGTTAGGCGCCAACGAACAAGTTCTACGGATGGAACGAATTCGCTATG
GTGATGATGTGCCAATTTGTTTTGAGGTCGCAACAGTTCCAGAACGACTCGTCAAGCAGTTCACCAAGGACGAAATTACG
AGTTCGTTGTATCGGACGTTAGAAGAGAAGGCAAGTTTAGTGCCTGGTAAGGCTCAACAGACGGTTTCGGCGATGTCTGC
TTCTGAGCGTATCGCGGAATACTTGTCAGTCCGGCGTGGCGATGCGTTGCTACGGTTACGGCAGATTTCGTATTTGCAAA
CCGGCGAACCGTTTGAATACGTGCGGACCCAGTACGTTGGTAACCGGTTTGAGTTTTATCTTGAAAAATAA

Upstream 100 bases:

>100_bases
CCGGTAAAGATGCTGATATCAACATCTTAGATGGCAATCAAGATTTAGTCGCAACATATAGCTACGGTAAAAAAGCAGCT
AAATAAATTAGAAGTAAGGG

Downstream 100 bases:

>100_bases
CCAGTCGGTCGGGTGCTGGGCACCTGATTAGAGTGGTGATACCAAAAATAGCTCACCTAGGATGTTATTCTAGGTGAGCT
ATTTTTGAATTCATGACTGA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSTMSSPIYIQIHNQIKQAIEAGRWAVGDRIPSERELATQFDVSRMTLRQAIQTLVDEGILERRVGAGTFVANQKVQEKM
SGVTSFTDLMLAQGKVPSSKTISYHVTSPSLSESEKLALGANEQVLRMERIRYGDDVPICFEVATVPERLVKQFTKDEIT
SSLYRTLEEKASLVPGKAQQTVSAMSASERIAEYLSVRRGDALLRLRQISYLQTGEPFEYVRTQYVGNRFEFYLEK

Sequences:

>Translated_236_residues
MSTMSSPIYIQIHNQIKQAIEAGRWAVGDRIPSERELATQFDVSRMTLRQAIQTLVDEGILERRVGAGTFVANQKVQEKM
SGVTSFTDLMLAQGKVPSSKTISYHVTSPSLSESEKLALGANEQVLRMERIRYGDDVPICFEVATVPERLVKQFTKDEIT
SSLYRTLEEKASLVPGKAQQTVSAMSASERIAEYLSVRRGDALLRLRQISYLQTGEPFEYVRTQYVGNRFEFYLEK
>Mature_235_residues
STMSSPIYIQIHNQIKQAIEAGRWAVGDRIPSERELATQFDVSRMTLRQAIQTLVDEGILERRVGAGTFVANQKVQEKMS
GVTSFTDLMLAQGKVPSSKTISYHVTSPSLSESEKLALGANEQVLRMERIRYGDDVPICFEVATVPERLVKQFTKDEITS
SLYRTLEEKASLVPGKAQQTVSAMSASERIAEYLSVRRGDALLRLRQISYLQTGEPFEYVRTQYVGNRFEFYLEK

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=213, Percent_Identity=32.3943661971831, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1786950, Length=228, Percent_Identity=28.0701754385965, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790118, Length=213, Percent_Identity=25.3521126760563, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788418, Length=236, Percent_Identity=25.8474576271186, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790540, Length=230, Percent_Identity=25.2173913043478, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1786303, Length=77, Percent_Identity=46.7532467532467, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26654; Mature: 26523

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTMSSPIYIQIHNQIKQAIEAGRWAVGDRIPSERELATQFDVSRMTLRQAIQTLVDEGI
CCCCCCCEEEEEHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LERRVGAGTFVANQKVQEKMSGVTSFTDLMLAQGKVPSSKTISYHVTSPSLSESEKLALG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEECC
ANEQVLRMERIRYGDDVPICFEVATVPERLVKQFTKDEITSSLYRTLEEKASLVPGKAQQ
CCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TVSAMSASERIAEYLSVRRGDALLRLRQISYLQTGEPFEYVRTQYVGNRFEFYLEK
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHEEEECC
>Mature Secondary Structure 
STMSSPIYIQIHNQIKQAIEAGRWAVGDRIPSERELATQFDVSRMTLRQAIQTLVDEGI
CCCCCCEEEEEHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LERRVGAGTFVANQKVQEKMSGVTSFTDLMLAQGKVPSSKTISYHVTSPSLSESEKLALG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEECC
ANEQVLRMERIRYGDDVPICFEVATVPERLVKQFTKDEITSSLYRTLEEKASLVPGKAQQ
CCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TVSAMSASERIAEYLSVRRGDALLRLRQISYLQTGEPFEYVRTQYVGNRFEFYLEK
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]