Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 28199203
Identifier: 28199203
GI number: 28199203
Start: 1544794
End: 1545747
Strand: Reverse
Name: 28199203
Synonym: PD1317
Alternate gene names: NA
Gene position: 1545747-1544794 (Counterclockwise)
Preceding gene: 28199204
Following gene: 28199202
Centisome position: 61.34
GC content: 51.36
Gene sequence:
>954_bases ATGAAAGCGTTAAATAAAATTCGATATGCGTTTTTAGTGTGTACGCTGATGGTCCTGGTGACATTAGCTGGATGCAACTC GGCAGATCGTTCTGCTGAACCGCCCCAGTCGTCCCACCAAGGGTCGGAACAAGAAGGTGCTAAAAAAACTCCTTTGAATG TTGAAGTTTTTAACCTGGGCGAGCGTTCGATGTTTGCAGTCTCCTCTGTATTGGTGACAGGGACTGCGGATGCTATTTTG ATTGATACGCAGTTTTCTGCGGCTGATGCACGTCAGCTTGTAGACAAAATAAAAGCATCTGGCAAGCGTCTGAAGGCTAT CTATATCAGTCATGGTGACCCTGATTATTACTTTGGTCTGGATAGTGTGCACGCTGCCTTCCCTGAGGCGAAGGTGTTCG CTACTCCGCAAACTATCGCGCATATCCAGGCCACCAAAGATGCGAAACTGAAGCTCTGGGCGCCACAGCTGGGACAGGAT GCACCGAAACAAATCTTGATTCCAGAACCAATGCAAGGAGACCAGCTGGTACTGGAAGGTCAGGAATTGAGGATTATTGG TATGGATGGTCCGACGCCTGACCGTACTTTCGTGTGGATTCCCTCAAGCAGAACAGTTGCTGGCGGTATCTCGGTGATGG GGGCTCAGCATGTATGGATGGCTGACACACAGACCCCACAGTCCCACATGGAGTGGTTGGCTGTGCTGGATCGGATCAAA TCAATGGATCCGAAGGTAGTGGTTCCAGGACATTTTTTGCCTGGCGCGTCGCTGGACGTGCGCTCGGTGACGTTCACTGC CGATTATATTCGTGCCTTTGACGAGGAAACCGTCAAGGCCAAGGATTCGGCTGCGTTGATCGCGGCGATGAAGCAACGTT ATCCCGGACTTGGTGGAGAGGGATCGCTCGAACTCAGTGCCAAGGTGGCCAAGGGCGAGATGGAATGGAAGTGA
Upstream 100 bases:
>100_bases CGTGATTTCGTTAATCAGGGCGAAAGTATTGAATTATTATCAATAAAGAGAGTGCATTTTTATTTTATTTCAAAAATATT GAAAAGTAGGAGAGCTTGAA
Downstream 100 bases:
>100_bases TGTGATGGGCGACTATGCTCACGTTTCTATCCTTATTCCTACACGGCGTGGTGCTTCTTTGTGATAAATGCATCTATTTT CTATTGCGGAGTGTCGCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: Metallo-Beta-Lactamase Superfamily Protein; Metallo-Beta-Lactamase Family Protein; Zn-Dependent Hydrolase; Beta-Lactamase Domain Protein; Beta-Lactamase-Like; Zn-Dependent Hydrolase Including Glyoxylase; Metallo-Beta-Lactamase; Beta-Lactamase Class B; Twin-Arginine Translocation Pathway Signal; Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Protein; Signal Peptide; Beta-Lactamase-Like Protein; Beta-Lactamase; Exported Metallo-Beta-Lactamase Superfamily Protein; Hydrolase
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MKALNKIRYAFLVCTLMVLVTLAGCNSADRSAEPPQSSHQGSEQEGAKKTPLNVEVFNLGERSMFAVSSVLVTGTADAIL IDTQFSAADARQLVDKIKASGKRLKAIYISHGDPDYYFGLDSVHAAFPEAKVFATPQTIAHIQATKDAKLKLWAPQLGQD APKQILIPEPMQGDQLVLEGQELRIIGMDGPTPDRTFVWIPSSRTVAGGISVMGAQHVWMADTQTPQSHMEWLAVLDRIK SMDPKVVVPGHFLPGASLDVRSVTFTADYIRAFDEETVKAKDSAALIAAMKQRYPGLGGEGSLELSAKVAKGEMEWK
Sequences:
>Translated_317_residues MKALNKIRYAFLVCTLMVLVTLAGCNSADRSAEPPQSSHQGSEQEGAKKTPLNVEVFNLGERSMFAVSSVLVTGTADAIL IDTQFSAADARQLVDKIKASGKRLKAIYISHGDPDYYFGLDSVHAAFPEAKVFATPQTIAHIQATKDAKLKLWAPQLGQD APKQILIPEPMQGDQLVLEGQELRIIGMDGPTPDRTFVWIPSSRTVAGGISVMGAQHVWMADTQTPQSHMEWLAVLDRIK SMDPKVVVPGHFLPGASLDVRSVTFTADYIRAFDEETVKAKDSAALIAAMKQRYPGLGGEGSLELSAKVAKGEMEWK >Mature_317_residues MKALNKIRYAFLVCTLMVLVTLAGCNSADRSAEPPQSSHQGSEQEGAKKTPLNVEVFNLGERSMFAVSSVLVTGTADAIL IDTQFSAADARQLVDKIKASGKRLKAIYISHGDPDYYFGLDSVHAAFPEAKVFATPQTIAHIQATKDAKLKLWAPQLGQD APKQILIPEPMQGDQLVLEGQELRIIGMDGPTPDRTFVWIPSSRTVAGGISVMGAQHVWMADTQTPQSHMEWLAVLDRIK SMDPKVVVPGHFLPGASLDVRSVTFTADYIRAFDEETVKAKDSAALIAAMKQRYPGLGGEGSLELSAKVAKGEMEWK
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34408; Mature: 34408
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKALNKIRYAFLVCTLMVLVTLAGCNSADRSAEPPQSSHQGSEQEGAKKTPLNVEVFNLG CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC ERSMFAVSSVLVTGTADAILIDTQFSAADARQLVDKIKASGKRLKAIYISHGDPDYYFGL CHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECC DSVHAAFPEAKVFATPQTIAHIQATKDAKLKLWAPQLGQDAPKQILIPEPMQGDQLVLEG HHHHHCCCCCEEEECCHHHEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCEEEEEC QELRIIGMDGPTPDRTFVWIPSSRTVAGGISVMGAQHVWMADTQTPQSHMEWLAVLDRIK CEEEEEECCCCCCCCEEEEECCCCEEECCEEEECCCEEEEECCCCHHHHHHHHHHHHHHH SMDPKVVVPGHFLPGASLDVRSVTFTADYIRAFDEETVKAKDSAALIAAMKQRYPGLGGE CCCCCEEECCCCCCCCCCEEEEEEEEHHHHHHHCHHHHHCCCHHHHHHHHHHHCCCCCCC GSLELSAKVAKGEMEWK CCEEEEEEEECCCCCCC >Mature Secondary Structure MKALNKIRYAFLVCTLMVLVTLAGCNSADRSAEPPQSSHQGSEQEGAKKTPLNVEVFNLG CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC ERSMFAVSSVLVTGTADAILIDTQFSAADARQLVDKIKASGKRLKAIYISHGDPDYYFGL CHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECC DSVHAAFPEAKVFATPQTIAHIQATKDAKLKLWAPQLGQDAPKQILIPEPMQGDQLVLEG HHHHHCCCCCEEEECCHHHEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCEEEEEC QELRIIGMDGPTPDRTFVWIPSSRTVAGGISVMGAQHVWMADTQTPQSHMEWLAVLDRIK CEEEEEECCCCCCCCEEEEECCCCEEECCEEEECCCEEEEECCCCHHHHHHHHHHHHHHH SMDPKVVVPGHFLPGASLDVRSVTFTADYIRAFDEETVKAKDSAALIAAMKQRYPGLGGE CCCCCEEECCCCCCCCCCEEEEEEEEHHHHHHHCHHHHHCCCHHHHHHHHHHHCCCCCCC GSLELSAKVAKGEMEWK CCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA