Definition | Xylella fastidiosa Temecula1, complete genome. |
---|---|
Accession | NC_004556 |
Length | 2,519,802 |
Click here to switch to the map view.
The map label for this gene is actP [H]
Identifier: 28199180
GI number: 28199180
Start: 1513581
End: 1515305
Strand: Reverse
Name: actP [H]
Synonym: PD1294
Alternate gene names: 28199180
Gene position: 1515305-1513581 (Counterclockwise)
Preceding gene: 28199181
Following gene: 28199179
Centisome position: 60.14
GC content: 50.78
Gene sequence:
>1725_bases ATGAACATAGGCAGGCATCTTTTGTTGGTGTTGTTTGGGTGGTTGCCGGTGAGATTGGGGTTTGCTGCAGATGCGATAAG TGTTGTCGATAAGCAGCCGGTAAATTGGGTGGCGATCACCATGTTCGCTGTTTTTGTGCTGATTACGTTATGGATCACTC AGTGGGCCGCGAAGAAGACGCGATCATCTGCGGACTTTTATACGGCTGGGGGGACAGTCACCGGTTTCCAAAATGGTTTA GCGATTGCCGGTGACTACGTGTCCGCTGCTTCGTTTCTTGGTATTACTTCGGCAGTGATGGCCAATGGCTATGATGGAAT GCTCTATGCAATTGGCTTTTTAGTTGGTTGGCCGATTCTGACTTTTTTGATTGCTGAGCGGCTGCGCAATCTTGGCAAAT ATACTTTTGCTGATGTGGTGGCTTACCGTTTTGCGGCGACGTCAGTTCGGTTGTTTGCTTCCGTTAGTACGTTGGTGGTG GTGTTGTGTTATCTGATTGCACAGATGGTTGGGGCCGGTGCGCTGATTAGGTTGTTGTTTGGTTTAGATTATTGGGTTGC AATGGTGCTGGTTGGCGGACTGATGATGGTGTACGTGTTGTTTGGTGGGATGGCTGCAACCACCTGGGTACAGATTATTA AGGCGGTGCTGTTGCTGATTGGTGCGACTTTCATGGCAGTCATGATCATGCGCAGGTTCGGTTTTAATTTTGAGGGGTTG TTTGCGAGTGCGGTGGAGGTCAAGACTCAAATTGCGATGGCGGGCGGTAAATCTGGGGAGGAGGCTAAAGCGTTAGGGCT ATCGATCATGGCGCCGGGTAGTTTTATCAAGGATCCAATTTCGGCGATTTCATTAGGCATCGCATTGGTATTCGGTACTG CGGGGTTACCACATATTTTAATGCGCTTCTTCACCGTGCCTGACGCCAGACAGGCGCGTCATTCGGTGTTGTGGGCGATT ACCTGGATCGGTTATTGCTACATCTTGATGTTTATCATTGGATTCGGTGCGATTGTGCTTGTGTTAGCGAATCCGCAGTA TGCCGATATCGCTTCTGGCACCATCCGCGGTGGTCAGGGTGCAGCCAATATGGCTGCGGTGCTTGTCGCCAAAGTAGTCG GGGGTAATGTGTTCATGGGGTTTGTCTCTGCTGTGGCATTTGCGACGATTCTGGCGGTGGTAGCAGGGTTGGCGTTGTCT GGTGCATCGGCGGTGTCACATGATGTGTATGCGATGGTGATTAAGCAGGGTAAGCCATCTTCGGATACTGAGTTGTTGGT CTCGCGTGTGACCACGGCAGTATTAGGTGTGGTTGCGGTGTTGCTGGGGATCGTGTTTCAGAAGCAGAATGTTGCGTTCA TGGTGTCATTAGCATTTGCGATTGCAGCGTCGGCTAATTTCCCTGTACTGGTTCTGTCGCTGTTTTGGAAGAATTGTACG ACGAGGGGTGCGGTAATCGGTGGTTTTCTCGGTTTGATTTCTTCGTTGGTGTTGACGGTGTTATCACCTTCGGTGTGGGT CGATACGTTGGGTCATTCGGTGGATTCGGTGCGATTCCCTTACACGTCGCCGGCATTGTTTTCCATGACCATAGGGTTTG TCGGTATTTGGTTGTTTTCGGTGCTGGATCGTAGTGGCCGGGCGGCGAAGGAGCGCGTTGCGTTTAAGGCGCAGCAGGTA CGTGCTGAAACTGGATTAGGTGCTTCCAAAATGTCACCCAATTGA
Upstream 100 bases:
>100_bases GGGTGATGCTGTTCGCCATTATTGTTACTGCGGTTTATGTTTTTTTTTCCAACATTGTCTACGACAAATTAAGTCGTAAC ATTCTTGAGGATGCCTGTAA
Downstream 100 bases:
>100_bases TTCGCTTAGCATTAAAAGATGTACGGCGTTGGAGTGTCTGCGACCTTGTGTACGGATTGTTTGGGTTAGGAGTTGGTGTC GATTGATGCGAGTCGTTGGC
Product: acetate permease
Products: NA
Alternate protein names: Acetate permease; Acetate transporter ActP [H]
Number of amino acids: Translated: 574; Mature: 574
Protein sequence:
>574_residues MNIGRHLLLVLFGWLPVRLGFAADAISVVDKQPVNWVAITMFAVFVLITLWITQWAAKKTRSSADFYTAGGTVTGFQNGL AIAGDYVSAASFLGITSAVMANGYDGMLYAIGFLVGWPILTFLIAERLRNLGKYTFADVVAYRFAATSVRLFASVSTLVV VLCYLIAQMVGAGALIRLLFGLDYWVAMVLVGGLMMVYVLFGGMAATTWVQIIKAVLLLIGATFMAVMIMRRFGFNFEGL FASAVEVKTQIAMAGGKSGEEAKALGLSIMAPGSFIKDPISAISLGIALVFGTAGLPHILMRFFTVPDARQARHSVLWAI TWIGYCYILMFIIGFGAIVLVLANPQYADIASGTIRGGQGAANMAAVLVAKVVGGNVFMGFVSAVAFATILAVVAGLALS GASAVSHDVYAMVIKQGKPSSDTELLVSRVTTAVLGVVAVLLGIVFQKQNVAFMVSLAFAIAASANFPVLVLSLFWKNCT TRGAVIGGFLGLISSLVLTVLSPSVWVDTLGHSVDSVRFPYTSPALFSMTIGFVGIWLFSVLDRSGRAAKERVAFKAQQV RAETGLGASKMSPN
Sequences:
>Translated_574_residues MNIGRHLLLVLFGWLPVRLGFAADAISVVDKQPVNWVAITMFAVFVLITLWITQWAAKKTRSSADFYTAGGTVTGFQNGL AIAGDYVSAASFLGITSAVMANGYDGMLYAIGFLVGWPILTFLIAERLRNLGKYTFADVVAYRFAATSVRLFASVSTLVV VLCYLIAQMVGAGALIRLLFGLDYWVAMVLVGGLMMVYVLFGGMAATTWVQIIKAVLLLIGATFMAVMIMRRFGFNFEGL FASAVEVKTQIAMAGGKSGEEAKALGLSIMAPGSFIKDPISAISLGIALVFGTAGLPHILMRFFTVPDARQARHSVLWAI TWIGYCYILMFIIGFGAIVLVLANPQYADIASGTIRGGQGAANMAAVLVAKVVGGNVFMGFVSAVAFATILAVVAGLALS GASAVSHDVYAMVIKQGKPSSDTELLVSRVTTAVLGVVAVLLGIVFQKQNVAFMVSLAFAIAASANFPVLVLSLFWKNCT TRGAVIGGFLGLISSLVLTVLSPSVWVDTLGHSVDSVRFPYTSPALFSMTIGFVGIWLFSVLDRSGRAAKERVAFKAQQV RAETGLGASKMSPN >Mature_574_residues MNIGRHLLLVLFGWLPVRLGFAADAISVVDKQPVNWVAITMFAVFVLITLWITQWAAKKTRSSADFYTAGGTVTGFQNGL AIAGDYVSAASFLGITSAVMANGYDGMLYAIGFLVGWPILTFLIAERLRNLGKYTFADVVAYRFAATSVRLFASVSTLVV VLCYLIAQMVGAGALIRLLFGLDYWVAMVLVGGLMMVYVLFGGMAATTWVQIIKAVLLLIGATFMAVMIMRRFGFNFEGL FASAVEVKTQIAMAGGKSGEEAKALGLSIMAPGSFIKDPISAISLGIALVFGTAGLPHILMRFFTVPDARQARHSVLWAI TWIGYCYILMFIIGFGAIVLVLANPQYADIASGTIRGGQGAANMAAVLVAKVVGGNVFMGFVSAVAFATILAVVAGLALS GASAVSHDVYAMVIKQGKPSSDTELLVSRVTTAVLGVVAVLLGIVFQKQNVAFMVSLAFAIAASANFPVLVLSLFWKNCT TRGAVIGGFLGLISSLVLTVLSPSVWVDTLGHSVDSVRFPYTSPALFSMTIGFVGIWLFSVLDRSGRAAKERVAFKAQQV RAETGLGASKMSPN
Specific function: Transports acetate [H]
COG id: COG4147
COG function: function code R; Predicted symporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI310128183, Length=485, Percent_Identity=23.7113402061856, Blast_Score=92, Evalue=1e-18, Organism=Escherichia coli, GI1790503, Length=550, Percent_Identity=61.0909090909091, Blast_Score=667, Evalue=0.0, Organism=Escherichia coli, GI1787251, Length=469, Percent_Identity=24.9466950959488, Blast_Score=83, Evalue=4e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014083 - InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 60836; Mature: 60836
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: PS00456 NA_SOLUT_SYMP_1 ; PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIGRHLLLVLFGWLPVRLGFAADAISVVDKQPVNWVAITMFAVFVLITLWITQWAAKKT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RSSADFYTAGGTVTGFQNGLAIAGDYVSAASFLGITSAVMANGYDGMLYAIGFLVGWPIL CCCCCEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH TFLIAERLRNLGKYTFADVVAYRFAATSVRLFASVSTLVVVLCYLIAQMVGAGALIRLLF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH GLDYWVAMVLVGGLMMVYVLFGGMAATTWVQIIKAVLLLIGATFMAVMIMRRFGFNFEGL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH FASAVEVKTQIAMAGGKSGEEAKALGLSIMAPGSFIKDPISAISLGIALVFGTAGLPHIL HHHHHHHHHHHHHCCCCCCCHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHH MRFFTVPDARQARHSVLWAITWIGYCYILMFIIGFGAIVLVLANPQYADIASGTIRGGQG HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHCCCCCCHHCCCCCCCCCCC AANMAAVLVAKVVGGNVFMGFVSAVAFATILAVVAGLALSGASAVSHDVYAMVIKQGKPS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEECCCCC SDTELLVSRVTTAVLGVVAVLLGIVFQKQNVAFMVSLAFAIAASANFPVLVLSLFWKNCT CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC TRGAVIGGFLGLISSLVLTVLSPSVWVDTLGHSVDSVRFPYTSPALFSMTIGFVGIWLFS CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH VLDRSGRAAKERVAFKAQQVRAETGLGASKMSPN HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MNIGRHLLLVLFGWLPVRLGFAADAISVVDKQPVNWVAITMFAVFVLITLWITQWAAKKT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RSSADFYTAGGTVTGFQNGLAIAGDYVSAASFLGITSAVMANGYDGMLYAIGFLVGWPIL CCCCCEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH TFLIAERLRNLGKYTFADVVAYRFAATSVRLFASVSTLVVVLCYLIAQMVGAGALIRLLF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH GLDYWVAMVLVGGLMMVYVLFGGMAATTWVQIIKAVLLLIGATFMAVMIMRRFGFNFEGL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH FASAVEVKTQIAMAGGKSGEEAKALGLSIMAPGSFIKDPISAISLGIALVFGTAGLPHIL HHHHHHHHHHHHHCCCCCCCHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHH MRFFTVPDARQARHSVLWAITWIGYCYILMFIIGFGAIVLVLANPQYADIASGTIRGGQG HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHCCCCCCHHCCCCCCCCCCC AANMAAVLVAKVVGGNVFMGFVSAVAFATILAVVAGLALSGASAVSHDVYAMVIKQGKPS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEECCCCC SDTELLVSRVTTAVLGVVAVLLGIVFQKQNVAFMVSLAFAIAASANFPVLVLSLFWKNCT CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC TRGAVIGGFLGLISSLVLTVLSPSVWVDTLGHSVDSVRFPYTSPALFSMTIGFVGIWLFS CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH VLDRSGRAAKERVAFKAQQVRAETGLGASKMSPN HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA